Strain identifier

BacDive ID: 15059

Type strain: No

Species: Streptomyces cacaoi

Strain history: KCC S-0275 <-- S. T. Williams A-10 <-- ISP 5186 <-- NRRL 2390 <-- S. A. Waksman <-- NRRL <-- Nepera Chem. Co.; 196.

NCBI tax ID(s): 1898 (species)

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General

@ref: 9248

BacDive-ID: 15059

DSM-Number: 40186

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces cacaoi DSM 40186 is a mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 1898
  • Matching level: species

strain history

@refhistory
9248<- E.B. Shirling, ISP <- NRRL
67770KCC S-0275 <-- S. T. Williams A-10 <-- ISP 5186 <-- NRRL 2390 <-- S. A. Waksman <-- NRRL <-- Nepera Chem. Co.; 196.

doi: 10.13145/bacdive15059.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cacaoi
  • full scientific name: Streptomyces cacaoi (Waksman 1932) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces cacaoi
    20215Streptomyces aminophilus

@ref: 9248

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cacaoi subsp. cacaoi

full scientific name: Streptomyces cacaoi subsp. cacaoi (Waksman 1932) Isono et al. 1965 emend. Lanoot et al. 2002

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9248
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
9248positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9248perimycin
9248antibiotics SS-70-A
67770Antifungal agent 1968

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1871.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_1101;99_1871&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB184183
  • Sequence Identity:
  • Total samples: 126
  • soil counts: 82
  • aquatic counts: 4
  • animal counts: 37
  • plant counts: 3

Safety information

risk assessment

  • @ref: 9248
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces cacaoi subsp. cacaoi gene for 16S rRNA, partial sequence, strain: NBRC 12837AB1841831459ena66857
20218Streptomyces cacaoi subsp. cacaoi gene for 16S ribosomal RNA, partial sequence, strain: JCM 4275D44040121ena66857

External links

@ref: 9248

culture collection no.: DSM 40186, ATCC 13558, ATCC 14961, ATCC 23878, CBS 617.68, IFO 12837, ISP 5186, JCM 4275, JCM 4619, KCC S-0275, KCC S-0619, NBRC 12837, NCIB 9827, NRRL 2390, RIA 1140, BCRC 11858, CGMCC 4.1416, KCTC 9673, LMG 19319, MTCC 2526, NCIMB 9827, VKM Ac-706

straininfo link

  • @ref: 84165
  • straininfo: 62843

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12054245The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus, Streptomyces cacaoi subsp. cacaoi, Streptomyces caeruleus and Streptomyces violaceus.Lanoot B, Vancanneyt M, Cleenwerck I, Wang L, Li W, Liu Z, Swings JInt J Syst Evol Microbiol10.1099/00207713-52-3-8232002Bacterial Proteins/*analysis, Bacterial Typing Techniques, Electrophoresis, Polyacrylamide Gel, Nucleic Acid Hybridization, Phenotype, Species Specificity, Streptomyces/*chemistry/*classification/geneticsEnzymology
Enzymology32192516Identification and engineering of 32 membered antifungal macrolactone notonesomycins.Goh F, Zhang MM, Lim TR, Low KN, Nge CE, Heng E, Yeo WL, Sirota FL, Crasta S, Tan Z, Ng V, Leong CY, Zhang H, Lezhava A, Chen SL, Hoon SS, Eisenhaber F, Eisenhaber B, Kanagasundaram Y, Wong FT, Ng SBMicrob Cell Fact10.1186/s12934-020-01328-x2020Antifungal Agents/*isolation & purification/metabolism, Cloning, Molecular, Macrolides/*isolation & purification/metabolism, Multigene Family, Streptomyces/*genetics/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9248Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40186)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40186
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84165Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID62843.1StrainInfo: A central database for resolving microbial strain identifiers