Strain identifier

BacDive ID: 150302

Type strain: No

Species: Clostridium septicum

NCBI tax ID(s): 1504 (species)

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General

@ref: 54843

BacDive-ID: 150302

keywords: Bacteria

description: Clostridium septicum CCUG 39581 is a bacterium that was isolated from Bovine necrotic muscle tissue,deceased animal.

NCBI tax id

  • NCBI tax id: 1504
  • Matching level: species

doi: 10.13145/bacdive150302.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium septicum
  • full scientific name: Clostridium septicum (Macé 1889) Ford 1927 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus septicus

@ref: 54843

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium septicum

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54843C12:03.612
    54843C14:022.514
    54843C16:027.216
    54843C18:04.718
    54843C13:0 ISO 2OH1.913.814
    54843C16:1 ω7c6.815.819
    54843C16:1 ω9c6.615.774
    54843C17:1 ω5c ISO116.461
    54843C18:1 ω7c /12t/9t4.317.824
    54843C18:1 ω9c9.117.769
    54843C18:2 ω6,9c/C18:0 ANTE10.417.724
    54843Unidentified0.710.744
    54843Unidentified1.213.766
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
54843---+-+---+------+------------

Isolation, sampling and environmental information

isolation

  • @ref: 54843
  • sample type: Bovine necrotic muscle tissue,deceased animal
  • sampling date: 1998-07-01
  • geographic location: Gotland close beach
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Other#Decomposing animal
#Host#Mammals#Bovinae (Cow, Cattle)

External links

@ref: 54843

culture collection no.: CCUG 39581

straininfo link

  • @ref: 104582
  • straininfo: 108791

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54843Curators of the CCUGhttps://www.ccug.se/strain?id=39581Culture Collection University of Gothenburg (CCUG) (CCUG 39581)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
104582Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108791.1