Strain identifier

BacDive ID: 150285

Type strain: No

Species: Herminiimonas sp.

Variant: EF group 98

NCBI tax ID(s): 1926289 (species)

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General

@ref: 54821

BacDive-ID: 150285

keywords: Bacteria, aerobe, mesophilic

description: Herminiimonas sp. CCUG 39498 is an aerobe, mesophilic bacterium that was isolated from Milk depleted of lactose.

NCBI tax id

  • NCBI tax id: 1926289
  • Matching level: species

doi: 10.13145/bacdive150285.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Herminiimonas
  • species: Herminiimonas sp.
  • full scientific name: Herminiimonas Fernandes et al. 2005

@ref: 54821

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Herminiimonas

species: Herminiimonas sp.

variant: EF group 98

type strain: no

Culture and growth conditions

culture temp

  • @ref: 54821
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54821
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54821C14:00.314
    54821C16:016.816
    54821C17:00.217
    54821C18:00.518
    54821C10:0 3OH5.411.423
    54821C16:1 ω7c24.115.819
    54821C17:0 CYCLO27.216.888
    54821C18:1 ω7c /12t/9t12.317.824
    54821C18:2 ω6,9c/C18:0 ANTE1.817.724
    54821C19:0 CYCLO ω8c9.218.9
    54821C19:0 ISO0.318.633
    54821Unidentified1.79.142
    54821Unidentified0.416.082
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54821--+--+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
54821+----------------+--+

Isolation, sampling and environmental information

isolation

  • @ref: 54821
  • sample type: Milk depleted of lactose
  • sampling date: 1998-06-01
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Host Body Product#Fluids#Milk
#Host Body Product#Other#Animal produced food (natural)

External links

@ref: 54821

culture collection no.: CCUG 39498

straininfo link

  • @ref: 104565
  • straininfo: 302863

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54821Curators of the CCUGhttps://www.ccug.se/strain?id=39498Culture Collection University of Gothenburg (CCUG) (CCUG 39498)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
104565Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID302863.1