Strain identifier
version 8.1 (current version)
General
@ref: 54671
BacDive-ID: 150165
keywords: genome sequence, Bacteria
description: Haemophilus haemolyticus CCUG 39154 is a bacterium that was isolated from Human eye.
NCBI tax id
- NCBI tax id: 726
- Matching level: species
doi: 10.13145/bacdive150165.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Haemophilus
- species: Haemophilus haemolyticus
- full scientific name: Haemophilus haemolyticus Bergey et al. 1923 (Approved Lists 1980)
@ref: 54671
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Haemophilus
species: Haemophilus haemolyticus
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 54671
- sample type: Human eye
- sampling date: 1998-03-19
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Organ | #Eye |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haemophilus haemolyticus CCUG 39154 | GCA_001679445 | scaffold | ncbi | 726 |
| 66792 | Haemophilus haemolyticus strain CCUG 39154 | 726.60 | wgs | patric | 726 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.164 | no |
| gram-positive | no | 97.905 | no |
| anaerobic | no | 93.891 | no |
| aerobic | no | 96.435 | no |
| halophile | yes | 52.732 | no |
| spore-forming | no | 98.494 | no |
| glucose-util | no | 58.91 | no |
| thermophile | no | 98.086 | no |
| motile | no | 90.16 | no |
| glucose-ferment | no | 51.749 | no |
External links
@ref: 54671
culture collection no.: CCUG 39154
straininfo link
- @ref: 104467
- straininfo: 54202
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 54671 | Curators of the CCUG | https://www.ccug.se/strain?id=39154 | Culture Collection University of Gothenburg (CCUG) (CCUG 39154) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 104467 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54202.1 |