Strain identifier
BacDive ID: 15006
Type strain:
Species: Streptomyces atroolivaceus
Strain history: KCC S-0432 <-- Y. Okami <-- SAJ <-- ISP 5211 <-- INMI 1475.
NCBI tax ID(s): 67338 (species)
General
@ref: 9383
BacDive-ID: 15006
DSM-Number: 40211
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces atroolivaceus DSM 40211 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 67338
- Matching level: species
strain history
@ref | history |
---|---|
9383 | <- E.B. Shirling, ISP <- N.A. Krassilnikov, INMI |
67770 | KCC S-0432 <-- Y. Okami <-- SAJ <-- ISP 5211 <-- INMI 1475. |
doi: 10.13145/bacdive15006.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces atroolivaceus
- full scientific name: Streptomyces atroolivaceus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces atroolivaceus 20215 Actinomyces olivoviridis 20215 Streptomyces olivoviridis
@ref: 9383
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces atroolivaceus
full scientific name: Streptomyces atroolivaceus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 emend. Nouioui et al. 2018
type strain: no
Morphology
multimedia
- @ref: 9383
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40211.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9383 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
9383 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18558 | positive | optimum | 28 | mesophilic |
9383 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity |
---|---|---|---|
18558 | 17234 | glucose | + |
18558 | 22599 | arabinose | + |
18558 | 17992 | sucrose | - |
18558 | 18222 | xylose | - |
18558 | 17268 | myo-inositol | - |
18558 | 29864 | mannitol | + |
18558 | 28757 | fructose | + |
18558 | 26546 | rhamnose | + |
18558 | 16634 | raffinose | - |
18558 | 62968 | cellulose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18558 | + | + | + | + | + | + | - | + | - | + | + | - | + | - | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: DQ442535
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9383 | 1 | Risk group (German classification) |
18558 | 1 | German classification |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Streptomyces olivoviridis gene for 16S rRNA, partial sequence, strain: NBRC 12897 | AB184227 | 1475 | ena | 67338 |
20218 | Streptomyces olivoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4432 | D44140 | 120 | ena | 67338 |
20218 | Streptomyces olivoviridis strain DSM 40211 16S ribosomal RNA gene, partial sequence | GU383163 | 779 | ena | 67338 |
67770 | Streptomyces olivoviridis strain NRRL B-3374T 16S ribosomal RNA gene, partial sequence | DQ442535 | 1420 | ena | 67338 |
External links
@ref: 9383
culture collection no.: DSM 40211, ATCC 15882, ATCC 23944, CBS 928.68, IFO 12897, INMI 1475, ISP 5211, JCM 4432, JCM 4658, NBRC 12897, RIA 1157, RIA 661, BCRC 13793, CGMCC 4.1739, NRRL B-3374, VKM Ac-259, VTT E-073014
straininfo link
- @ref: 84114
- straininfo: 92840
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9383 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40211) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40211 | |||
18558 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM40211.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
84114 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92840.1 | StrainInfo: A central database for resolving microbial strain identifiers |