Strain identifier

BacDive ID: 150040

Type strain: No

Species: Stenotrophomonas sp.

Variant: EF group 21F

NCBI tax ID(s): 69392 (species)

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General

@ref: 54541

BacDive-ID: 150040

keywords: Bacteria, aerobe, mesophilic

description: Stenotrophomonas sp. CCUG 38905 is an aerobe, mesophilic bacterium that was isolated from Human blood,85-yr-old man.

NCBI tax id

  • NCBI tax id: 69392
  • Matching level: species

doi: 10.13145/bacdive150040.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Stenotrophomonas
  • species: Stenotrophomonas sp.
  • full scientific name: Stenotrophomonas Palleroni and Bradbury 1993

@ref: 54541

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacterales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas sp.

variant: EF group 21F

type strain: no

Culture and growth conditions

culture temp

  • @ref: 54541
  • growth: positive
  • type: growth
  • temperature: 30-37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54541
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    54541C10:00.510
    54541C14:01.314
    54541C15:00.315
    54541C16:01.116
    54541C11:0 ANTEISO0.810.693
    54541C11:0 iso9.510.605
    54541C11:0 ISO 3OH512.09
    54541C12:0 3OH0.913.455
    54541C12:0 ISO 3OH0.413.098
    54541C13:0 iso1.412.612
    54541C13:0 ISO 3OH2.414.11
    54541C14:0 ISO2.313.618
    54541C15:0 ANTEISO5.714.711
    54541C15:0 ISO4114.621
    54541C15:1 ISO F4.514.414
    54541C16:0 iso1.715.626
    54541C16:1 ω7c5.315.819
    54541C16:1 ω9c1.215.774
    54541C17:0 iso1.816.629
    54541C17:1 ω9c ISO12.116.416
    54541C18:2 ω6,9c/C18:0 ANTE0.417.724
    54541Unidentified0.513.732
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
54541-+++-++-+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
54541------+------+-------

Isolation, sampling and environmental information

isolation

  • @ref: 54541
  • sample type: Human blood,85-yr-old man
  • sampling date: 1998-01-03
  • geographic location: Skövde
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood
#Infection#Patient

External links

@ref: 54541

culture collection no.: CCUG 38905

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54541Curators of the CCUGhttps://www.ccug.se/strain?id=38905Culture Collection University of Gothenburg (CCUG) (CCUG 38905)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym