Strain identifier
BacDive ID: 15004
Type strain: 
Species: Streptomyces armeniacus
Strain Designation: 26A-32
Strain history: KCC A-0070 <-- RIA 807 <-- L. V. Kalakoutskii 26A-32.
NCBI tax ID(s): 83291 (species)
version 8.1 (current version)
General
@ref: 10788
BacDive-ID: 15004
DSM-Number: 43125
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces armeniacus 26A-32 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 83291
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10788 | <- L. Ettlinger, LBG <- R. Hütter, ETH, 32694 <- V.D. Kuznetsov, RIA, 26A-32 |
| 67770 | KCC A-0070 <-- RIA 807 <-- L. V. Kalakoutskii 26A-32. |
doi: 10.13145/bacdive15004.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces armeniacus
- full scientific name: Streptomyces armeniacus (Kalakoutskii and Kusnetsov 1964) Wellington and Williams 1981
synonyms
- @ref: 20215
- synonym: Actinoplanes armeniacus
@ref: 10788
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces armeniacus
full scientific name: Streptomyces armeniacus (Kalakoutskii and Kusnetsov 1964) Wellington and Williams 1981
strain designation: 26A-32
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.091 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10788 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10788 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10788 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 10788 | soil | |||
| 67770 | Soil | Armenia | ARM | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_37807.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_9745;97_11742;98_27782;99_37807&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB018094
- Sequence Identity:
- Total samples: 119
- soil counts: 49
- aquatic counts: 5
- animal counts: 63
- plant counts: 2
Safety information
risk assessment
- @ref: 10788
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces armeniacus gene for 16S rRNA, partial sequence, strain: JCM 3070, clone: 21 | AB018092 | 1532 | ena | 83291 |
| 20218 | Streptomyces armeniacus gene for 16S rRNA, partial sequence, strain: JCM 3070, clone: 25 | AB018093 | 1532 | ena | 83291 |
| 20218 | Streptomyces armeniacus gene for 16S rRNA, partial sequence, strain: JCM 3070, clone: 6 | AB018094 | 1532 | ena | 83291 |
| 20218 | Streptomyces armeniacus gene for 16S rRNA, partial sequence, strain: NBRC 12555 | AB184102 | 1466 | ena | 83291 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces armeniacus ATCC 15676 | GCA_003355155 | chromosome | ncbi | 83291 |
| 66792 | Streptomyces armeniacus strain ATCC 15676 | 83291.4 | complete | patric | 83291 |
| 66792 | Streptomyces armeniacus ATCC 15676 | 2877698364 | complete | img | 83291 |
GC content
- @ref: 67770
- GC-content: 68.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 93.292 | no |
| flagellated | no | 98.264 | no |
| gram-positive | yes | 90.812 | no |
| anaerobic | no | 99.428 | no |
| halophile | no | 81.045 | no |
| spore-forming | yes | 95.264 | no |
| thermophile | no | 96.597 | yes |
| glucose-util | yes | 89.975 | no |
| aerobic | yes | 94.126 | no |
| glucose-ferment | no | 89.385 | no |
External links
@ref: 10788
culture collection no.: DSM 43125, ATCC 15676, CBS 559.75, IFO 12555, IMET 9250, JCM 3070, KCC A-0070, LBG A 3125, NBRC 12555, NCIMB 10179, RIA 807, VKM Ac-905, ETH 32694, BCRC 16847, CGMCC 4.1684, IFM 1166, IFM 1244, KCTC 9120, NBIMCC 1471
straininfo link
- @ref: 84112
- straininfo: 264402
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19329599 | Streptomyces nanshensis sp. nov., isolated from the Nansha Islands in the South China Sea. | Tian XP, Zhang YQ, Li QX, Zhi XY, Tang SK, Zhang S, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.003442-0 | 2009 | Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis | Genetics |
| Phylogeny | 19648351 | Streptomyces artemisiae sp. nov., isolated from surface-sterilized tissue of Artemisia annua L. | Zhao GZ, Li J, Qin S, Huang HY, Zhu WY, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.011965-0 | 2009 | Artemisia annua/*microbiology, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Metabolism |
| Phylogeny | 21724951 | Streptomyces pharmamarensis sp. nov. isolated from a marine sediment. | Carro L, Zuniga P, de la Calle F, Trujillo ME | Int J Syst Evol Microbiol | 10.1099/ijs.0.034066-0 | 2011 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Mediterranean Sea, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis | Genetics |
| Phylogeny | 22527624 | Streptomyces phytohabitans sp. nov., a novel endophytic actinomycete isolated from medicinal plant Curcuma phaeocaulis. | Bian GK, Qin S, Yuan B, Zhang YJ, Xing K, Ju XY, Li WJ, Jiang JH | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9737-8 | 2012 | China, Curcuma/*microbiology/physiology, Endophytes/classification/genetics/*isolation & purification/physiology, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, Plants, Medicinal/*microbiology/physiology, Streptomyces/classification/genetics/*isolation & purification/physiology | Enzymology |
| Phylogeny | 22696167 | Streptomyces oceani sp. nov., a new obligate marine actinomycete isolated from a deep-sea sample of seep authigenic carbonate nodule in South China Sea. | Tian XP, Xu Y, Zhang J, Li J, Chen Z, Kim CJ, Li WJ, Zhang CS, Zhang S | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9743-x | 2012 | Carbonates/*metabolism, China, Geologic Sediments/*microbiology, Molecular Sequence Data, Oceans and Seas, Phylogeny, Seawater/*microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Metabolism |
| Genetics | 30533638 | Draft Genome Sequence of the Type Strain Streptomyces armeniacus ATCC 15676. | Labana P, Gosse JT, Boddy CN | Microbiol Resour Announc | 10.1128/MRA.01107-18 | 2018 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10788 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43125) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43125 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84112 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID264402.1 | StrainInfo: A central database for resolving microbial strain identifiers |