Strain identifier
BacDive ID: 14995
Type strain: 
Species: Streptomyces anulatus
Strain history: KCC S-0356 <-- IFO 12853 <-- SAJ <-- ISP 5265 <-- RIA 648 <-- INMI 2292.
NCBI tax ID(s): 1892 (species)
version 9.1 (current version)
General
@ref: 9418
BacDive-ID: 14995
DSM-Number: 40265
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive, antibiotic compound production
description: Streptomyces anulatus DSM 40265 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
- NCBI tax id: 1892
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9418 | <- E.B. Shirling, ISP <- N.A. Krassilnikov, RIA |
| 67770 | KCC S-0356 <-- IFO 12853 <-- SAJ <-- ISP 5265 <-- RIA 648 <-- INMI 2292. |
doi: 10.13145/bacdive14995.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces anulatus
- full scientific name: Streptomyces anulatus (Beijerinck 1912) Waksman 1953 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces fluorescens 20215 Streptomyces chrysomallus 20215 Actinomyces fluorescens 20215 Streptomyces citreofluorescens 20215 Actinomyces praecox 20215 Actinomyces citreofluorescens 20215 Streptomyces praecox
@ref: 9418
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces anulatus
full scientific name: Streptomyces anulatus (Beijerinck 1912) Waksman 1953 emend. Lanoot et al. 2005
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 91.429
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9418 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9418 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 9418 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 91.222
compound production
| @ref | compound |
|---|---|
| 9418 | actinomycin C |
| 9418 | anti-bacterial antibiotic |
| 9418 | anti-fungal antibiotic |
metabolite production
- @ref: 67770
- metabolite: actinomycin C
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country |
|---|---|---|---|---|
| 9418 | soil | |||
| 67770 | Soil | Kola Peninsula | Russia | RUS |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_135.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: HQ995503
- Sequence Identity:
- Total samples: 4030
- soil counts: 2441
- aquatic counts: 286
- animal counts: 1009
- plant counts: 294
Safety information
risk assessment
- @ref: 9418
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces anulatus gene for 16S rRNA, partial sequence, strain: NBRC 12853 | AB184195 | 1474 | nuccore | 1892 |
| 20218 | Streptomyces anulatus strain DSM 40265 16S ribosomal RNA gene, partial sequence | GU383164 | 779 | nuccore | 1892 |
| 67770 | Streptomyces anulatus strain NRRL B-3362 16S ribosomal RNA gene, partial sequence | AY999797 | 1353 | nuccore | 1892 |
| 67770 | Streptomyces anulatus strain KCTC 9710 16S ribosomal RNA gene, partial sequence | HQ995503 | 1403 | nuccore | 1892 |
| 124043 | Streptomyces anulatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4356. | D44074 | 120 | nuccore | 1892 |
Genome sequences
- @ref: 67770
- description: Streptomyces anulatus NRRL B-3362
- accession: GCA_000717105
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1892
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 71.3 | genome sequence analysis |
| 67770 | 72 | fluorimetric |
| 67770 | 72 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.429 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.299 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.776 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.222 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87 | no |
External links
@ref: 9418
culture collection no.: DSM 40265, AS 4.1652, ATCC 15858, ATCC 23898, CBS 684.68, IFO 12853, INMI 2292, ISP 5265, LMG 20475, NBRC 12853, RIA 1187, RIA 648, JCM 4356, BCRC 11820, CGMCC 4.1652, KCTC 9710, MTCC 2528, NCIMB 9806, NRRL B-3362, VKM Ac-96
straininfo link
- @ref: 84103
- straininfo: 92836
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9418 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40265) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40265 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 84103 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92836.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |