Strain identifier
BacDive ID: 14984
Type strain: 
Species: Streptomyces antibioticus
Strain history: <- R. E. Gordon, IMRU, (Streptomyces antibioticus)
NCBI tax ID(s): 1890 (species)
version 9.1 (current version)
General
@ref: 10345
BacDive-ID: 14984
DSM-Number: 41481
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Streptomyces antibioticus DSM 41481 is a spore-forming bacterium of the family Streptomycetaceae.
NCBI tax id
- NCBI tax id: 1890
- Matching level: species
strain history
- @ref: 10345
- history: <- R. E. Gordon, IMRU, (Streptomyces antibioticus)
doi: 10.13145/bacdive14984.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces antibioticus
- full scientific name: Streptomyces antibioticus (Waksman and Woodruff 1941) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Actinomyces antibioticus
@ref: 10345
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces antibioticus
full scientific name: Streptomyces antibioticus (Waksman and Woodruff 1941) Waksman and Henrici 1948 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 10345
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10345
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 91.078 |
| 69481 | yes | 100 |
Safety information
risk assessment
- @ref: 10345
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces antibioticus 16S ribosomal RNA gene, partial sequence
- accession: AF417593
- length: 356
- database: nuccore
- NCBI tax ID: 1890
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces antibioticus DSM 41481 | GCA_012044595 | complete | ncbi | 1890 |
| 66792 | Streptomyces antibioticus DSM 41481 | GCA_002019855 | chromosome | ncbi | 1890 |
| 66792 | Streptomyces antibioticus strain DSM 41481 | 1890.27 | wgs | patric | 1890 |
| 66792 | Streptomyces antibioticus strain DSM 41481 | 1890.28 | complete | patric | 1890 |
| 66792 | Streptomyces antibioticus DSM 41481 | 2877705454 | complete | img | 1890 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.668 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.325 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.963 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 91.078 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 89.1 | no |
External links
@ref: 10345
culture collection no.: DSM 41481, IMRU 3720
straininfo link
- @ref: 84092
- straininfo: 50010
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 1706704 | Pleiotropic effects of a relC mutation in Streptomyces antibioticus. | Kelly KS, Ochi K, Jones GH | J Bacteriol | 10.1128/jb.173.7.2297-2300.1991 | 1991 | Dactinomycin/biosynthesis, Gene Expression Regulation, Bacterial, Guanosine Tetraphosphate/metabolism, Mutation, Oxidoreductases/genetics, RNA, Bacterial/metabolism, RNA, Messenger/metabolism, Ribosomes/metabolism, Streptomyces antibioticus/*genetics | Enzymology |
| 28435299 | Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. | Crnovcic I, Ruckert C, Semsary S, Lang M, Kalinowski J, Keller U | Adv Appl Bioinform Chem | 10.2147/AABC.S117707 | 2017 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10345 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41481) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41481 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 84092 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50010.1 | StrainInfo: A central database for resolving microbial strain identifiers |