Strain identifier

BacDive ID: 149778

Type strain: No

Species: Streptococcus agalactiae

NCBI tax ID(s): 1154815 (strain), 1311 (species)

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General

@ref: 54226

BacDive-ID: 149778

keywords: genome sequence, Bacteria

description: Streptococcus agalactiae CCUG 38383 is a bacterium that was isolated from Human ?.

NCBI tax id

NCBI tax idMatching level
1154815strain
1311species

doi: 10.13145/bacdive149778.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus agalactiae
  • full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptococcus difficile
    20215Streptococcus difficilis

@ref: 54226

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus agalactiae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no91
12543992.6positive

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 97

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 94.1

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
68381606565hippurate+hydrolysis
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838130849L-arabinose-builds acid from
6838117992sucrose+builds acid from
6838116634raffinose-builds acid from
6838127082trehalose+builds acid from
6838117716lactose-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose+builds acid from
6838129016arginine+hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucosidase-3.2.1.21
68381beta-glucuronidase+3.2.1.31
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381pyrrolidonyl arylamidase-3.4.19.3
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
54226+--+-++---+-+---++----+-++--+---

Isolation, sampling and environmental information

isolation

  • @ref: 54226
  • sample type: Human ?

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus agalactiae CCUG 38383GCA_000288835contigncbi1154815
66792Streptococcus agalactiae CCUG 383831154815.3wgspatric1154815
66792Streptococcus agalactiae CCUG 383832529293088draftimg1154815

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97
125439BacteriaNetgram_stainReaction to gram-stainingpositive92.6
125439BacteriaNetmotilityAbility to perform movementno86.7
125439BacteriaNetspore_formationAbility to form endo- or exosporesno94.1
125438gram-positivegram-positivePositive reaction to Gram-stainingyes85.335no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.945no
125438spore-formingspore-formingAbility to form endo- or exosporesno85.51no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no95.582no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.442no
125438motile2+flagellatedAbility to perform flagellated movementno91no

External links

@ref: 54226

culture collection no.: CCUG 38383

straininfo link

  • @ref: 104134
  • straininfo: 57459

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54226Curators of the CCUGhttps://www.ccug.se/strain?id=38383Culture Collection University of Gothenburg (CCUG) (CCUG 38383)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
104134Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID57459.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG