Strain identifier

BacDive ID: 149778

Type strain: No

Species: Streptococcus agalactiae

NCBI tax ID(s): 1154815 (strain), 1311 (species)

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General

@ref: 54226

BacDive-ID: 149778

keywords: genome sequence, Bacteria

description: Streptococcus agalactiae CCUG 38383 is a bacterium that was isolated from Human ?.

NCBI tax id

NCBI tax idMatching level
1154815strain
1311species

doi: 10.13145/bacdive149778.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus agalactiae
  • full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptococcus difficile
    20215Streptococcus difficilis

@ref: 54226

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus agalactiae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.646
69480100positive

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.997
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine+hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
54226+--+-++---+-+---++----+-++--+---

Isolation, sampling and environmental information

isolation

  • @ref: 54226
  • sample type: Human ?

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus agalactiae CCUG 38383GCA_000288835contigncbi1154815
66792Streptococcus agalactiae CCUG 383831154815.3wgspatric1154815
66792Streptococcus agalactiae CCUG 383832529293088draftimg1154815

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno97.087no
gram-positiveyes94.789no
anaerobicno95.408no
aerobicno94.666no
halophileyes87.039no
spore-formingno94.499no
flagellatedno98.571no
thermophileno99.545no
glucose-utilyes90.18no
glucose-fermentyes90.39no

External links

@ref: 54226

culture collection no.: CCUG 38383

straininfo link

  • @ref: 104134
  • straininfo: 57459

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
54226Curators of the CCUGhttps://www.ccug.se/strain?id=38383Culture Collection University of Gothenburg (CCUG) (CCUG 38383)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
104134Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID57459.1