Strain identifier
version 8.1 (current version)
General
@ref: 54210
BacDive-ID: 149766
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Capnocytophaga canimorsus CCUG 38354 is an aerobe, mesophilic bacterium that was isolated from Human blood,cat bite in hand,58-yr-old man.
NCBI tax id
- NCBI tax id: 28188
- Matching level: species
doi: 10.13145/bacdive149766.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Capnocytophaga
- species: Capnocytophaga canimorsus
- full scientific name: Capnocytophaga canimorsus Brenner et al. 1990
@ref: 54210
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Capnocytophaga
species: Capnocytophaga canimorsus
type strain: no
Culture and growth conditions
culture temp
- @ref: 54210
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 54210
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | - | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | + | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | + | 3.2.1.23 |
68377 | alkaline phosphatase | + | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 54210 C14:0 0.5 14 54210 C16:0 2.9 16 54210 C18:0 1 18 54210 C13:0 iso 0.6 12.612 54210 C15:0 ANTEISO 5.1 14.711 54210 C15:0 ISO 76.2 14.621 54210 C16:0 iso 0.3 15.626 54210 C16:1 ω7c 0.4 15.819 54210 C17:0 iso 0.8 16.629 54210 C18:1 ω9c 3.2 17.769 54210 C18:2 ω6,9c/C18:0 ANTE 3.3 17.724 54210 Unidentified 3.5 16.16 54210 Unidentified 1.6 17.551 54210 Unidentified 0.3 18.548 54210 unknown 16.580 0.3 16.58 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
54210 | - | + | + | + | - | + | + | - | + | - | + | + | - | - | - | + | - | + | - | - |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
54210 | - | + | - | + | - | - | - | - | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 54210
- sample type: Human blood,cat bite in hand,58-yr-old man
- sampling date: 1997-08-25
- geographic location: Kristianstad
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Fluids | #Blood |
#Host Body-Site | #Limb | #Hand |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Capnocytophaga canis CCUG 38354 | GCA_013276265 | contig | ncbi | 1848903 |
66792 | Capnocytophaga canis strain CCUG 38354 | 1848903.8 | wgs | patric | 1848903 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 85.713 | no |
gram-positive | no | 98.339 | no |
anaerobic | no | 94.853 | no |
aerobic | no | 82.58 | yes |
halophile | no | 73.824 | no |
spore-forming | no | 95.382 | no |
glucose-util | yes | 83.236 | no |
flagellated | no | 95.295 | no |
thermophile | no | 99.322 | yes |
glucose-ferment | no | 80.652 | no |
External links
@ref: 54210
culture collection no.: CCUG 38354
straininfo link
- @ref: 104123
- straininfo: 52527
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
54210 | Curators of the CCUG | https://www.ccug.se/strain?id=38354 | Culture Collection University of Gothenburg (CCUG) (CCUG 38354) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68377 | Automatically annotated from API NH | |||
68382 | Automatically annotated from API zym | |||
104123 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID52527.1 |