Strain identifier
BacDive ID: 1497
Type strain: 
Species: Aquibacillus albus
Strain history: S.-K. Tang YIM 93624.
NCBI tax ID(s): 1168171 (species)
version 9.1 (current version)
General
@ref: 17352
BacDive-ID: 1497
DSM-Number: 23711
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive
description: Aquibacillus albus DSM 23711 is a spore-forming, Gram-positive bacterium that was isolated from salt lake, surface soil.
NCBI tax id
- NCBI tax id: 1168171
- Matching level: species
strain history
| @ref | history |
|---|---|
| 17352 | <- S.-K. Tang, YIM; YIM 93624 <- S.-K. Tang and C. Chen |
| 67770 | S.-K. Tang YIM 93624. |
doi: 10.13145/bacdive1497.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Aquibacillus
- species: Aquibacillus albus
- full scientific name: Aquibacillus albus (Zhang et al. 2013) Amoozegar et al. 2014
synonyms
- @ref: 20215
- synonym: Virgibacillus albus
@ref: 17352
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Aquibacillus
species: Aquibacillus albus
full scientific name: Aquibacillus albus (Zhang et al. 2013) Amoozegar et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 17352
- name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514b
- composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 100.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 17352 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 17352 | salt lake, surface soil | Xinjiang province, Lop Nur salt lake | China | CHN | Asia |
| 67770 | Surface layer soil of Lop Nur salt lake in Xinjiang Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_155987.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_6058;97_7283;98_102841;99_155987&stattab=map
- Last taxonomy: Aquibacillus albus subclade
- 16S sequence: JQ680032
- Sequence Identity:
- Total samples: 15
- soil counts: 10
- aquatic counts: 4
- animal counts: 1
Safety information
risk assessment
- @ref: 17352
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17352
- description: Virgibacillus albus strain YIM 93624 16S ribosomal RNA gene, partial sequence
- accession: JQ680032
- length: 1540
- database: nuccore
- NCBI tax ID: 1168171
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aquibacillus albus DSM 23711 | GCA_016908325 | contig | ncbi | 1168171 |
| 66792 | Aquibacillus albus strain DSM 23711 | 1168171.3 | wgs | patric | 1168171 |
| 66792 | Virgibacillus albus DSM 23711 | 2901110272 | draft | img | 1168171 |
GC content
- @ref: 17352
- GC-content: 37.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 82.064 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.706 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 89.059 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 74.089 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 88.528 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 78.993 | no |
External links
@ref: 17352
culture collection no.: DSM 23711, JCM 17364, YIM 93624, IBRC M 10798
straininfo link
- @ref: 71143
- straininfo: 401208
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22622623 | Virgibacillus albus sp. nov., a novel moderately halophilic bacterium isolated from Lop Nur salt lake in Xinjiang province, China. | Zhang YJ, Zhou Y, Ja M, Shi R, Chun-Yu WX, Yang LL, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9750-y | 2012 | Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Virgibacillus/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis | Genetics |
| Phylogeny | 25062698 | Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov. | Amoozegar MA, Bagheri M, Didari M, Mehrshad M, Schumann P, Sproer C, Sanchez-Porro C, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijs.0.065375-0 | 2014 | Bacillaceae/classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Spores, Bacterial/genetics, Virgibacillus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry, Water Microbiology | Genetics |
| Phylogeny | 31339480 | Aquibacillus sediminis sp. nov., a moderately halophilic bacterium isolated from saltern soil. | Lee JC, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003599 | 2019 | Bacillaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17352 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23711) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23711 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 71143 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401208.1 | StrainInfo: A central database for resolving microbial strain identifiers |