Strain identifier

BacDive ID: 1495

Type strain: Yes

Species: Virgibacillus litoralis

Strain history: <- YG Chen, Yunnan Inst., China

NCBI tax ID(s): 578221 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15485

BacDive-ID: 1495

DSM-Number: 21085

keywords: spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, mesophilic, motile, rod-shaped

description: Virgibacillus litoralis DSM 21085 is an aerobe, spore-forming, mesophilic bacterium that was isolated from saline soil.

NCBI tax id

  • NCBI tax id: 578221
  • Matching level: species

strain history

doi: 10.13145/bacdive1495.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Virgibacillus
  • species: Virgibacillus litoralis
  • full scientific name: Virgibacillus litoralis Chen et al. 2012

@ref: 15485

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Virgibacillus

species: Virgibacillus litoralis

full scientific name: Virgibacillus litoralis Chen et al. 2012

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stain
67771rod-shapedyesperitrichous
67771positive

Culture and growth conditions

culture medium

  • @ref: 15485
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15485positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

  • @ref: 67771
  • type of spore: endospore
  • spore formation: yes

observation

  • @ref: 67771
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15485saline soilshore of Naozhou Island, Leizhou Bay, South China SeaChinaCHNAsia
67771From saline soilthe shore of Naozhou Island, Leizhou Bay, South China SeaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

Safety information

risk assessment

  • @ref: 15485
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15485
  • description: Virgibacillus litoralis strain JSM 089168 16S ribosomal RNA gene, partial sequence
  • accession: FJ425909
  • length: 1497
  • database: ena
  • NCBI tax ID: 578221

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Virgibacillus litoralis DSM 21085GCA_017873675contigncbi578221
66792Virgibacillus litoralis strain DSM 21085578221.3wgspatric578221
66792Virgibacillus litoralis DSM 210852913383645draftimg578221

GC content

  • @ref: 15485
  • GC-content: 40.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15485

culture collection no.: DSM 21085, KCTC 13228, JSM 089168

straininfo link

@refpassport
20218http://www.straininfo.net/strains/874338
20218http://www.straininfo.net/strains/874339

literature

  • topic: Phylogeny
  • Pubmed-ID: 19459062
  • title: Virgibacillus litoralis sp. nov., a moderately halophilic bacterium isolated from saline soil.
  • authors: Chen YG, Liu ZX, Peng DJ, Zhang YQ, Wang YX, Tang SK, Li WJ, Cui XL, Liu YQ
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-009-9349-0
  • year: 2009
  • mesh: Bacillaceae/classification/genetics/*isolation & purification/metabolism, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/*metabolism, *Soil Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15485Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21085)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21085
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc