Strain identifier
BacDive ID: 14948
Type strain: 
Species: Streptomyces albus subsp. albus
Strain history: <- L. Ettlinger, LBG <- IMRU <- P.H. Gregory
NCBI tax ID(s): 67257 (subspecies)
version 9.1 (current version)
General
@ref: 9779
BacDive-ID: 14948
DSM-Number: 40763
keywords: genome sequence, Bacteria, spore-forming
description: Streptomyces albus subsp. albus DSM 40763 is a spore-forming bacterium that was isolated from mouldy hay.
NCBI tax id
- NCBI tax id: 67257
- Matching level: subspecies
strain history
- @ref: 9779
- history: <- L. Ettlinger, LBG <- IMRU <- P.H. Gregory
doi: 10.13145/bacdive14948.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces albus subsp. albus
- full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962 (Approved Lists 1980)
@ref: 9779
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces albus subsp. albus
full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 90.608
multimedia
- @ref: 9779
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40763.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 9779
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 9779
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 92.864 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 9779
- sample type: mouldy hay
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fungi | |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body Product | #Plant | #Straw |
Safety information
risk assessment
- @ref: 9779
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces albus DSM 40763 | GCA_004768505 | scaffold | ncbi | 1888 |
| 66792 | Streptomyces albus strain DSM 40763 | 1888.34 | wgs | patric | 1888 |
| 66792 | Streptomyces albus DSM 40763 | GCA_024752535 | complete | ncbi | 1888 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.608 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.479 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.799 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.864 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88 | no |
External links
@ref: 9779
culture collection no.: DSM 40763, CGMCC AS 4.1448, IMRU 3888, LBG A 3140
straininfo link
- @ref: 84057
- straininfo: 13382
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24594582 | Isolation and structure elucidation of the nucleoside antibiotic strepturidin from Streptomyces albus DSM 40763. | Pesic A, Steinhaus B, Kemper S, Nachtigall J, Kutzner HJ, Hofle G, Sussmuth RD | J Antibiot (Tokyo) | 10.1038/ja.2014.16 | 2014 | Anti-Bacterial Agents/*chemistry/*isolation & purification, Nucleosides/*chemistry/*isolation & purification, Streptomyces/*chemistry/metabolism | Enzymology |
| Enzymology | 31222036 | Characterization of C-nucleoside Antimicrobials from Streptomyces albus DSM 40763: Strepturidin is Pseudouridimycin. | Rosenqvist P, Palmu K, Prajapati RK, Yamada K, Niemi J, Belogurov GA, Metsa-Ketela M, Virta P | Sci Rep | 10.1038/s41598-019-45375-w | 2019 | Anti-Infective Agents/*chemistry/isolation & purification/pharmacology, Genes, Bacterial, Multigene Family, Nucleosides/*analogs & derivatives/*chemistry/isolation & purification/pharmacology, Streptomyces/*chemistry/genetics | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9779 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40763) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40763 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 84057 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13382.1 | StrainInfo: A central database for resolving microbial strain identifiers |