Strain identifier
version 8.1 (current version)
General
@ref: 53511
BacDive-ID: 149155
keywords: Bacteria, aerobe, mesophilic
description: Sphingomonas sp. CCUG 36960 is an aerobe, mesophilic bacterium that was isolated from Water,municipal drinking water.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
doi: 10.13145/bacdive149155.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 53511
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 53511
- growth: positive
- type: growth
- temperature: 26-37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 53511
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53511 C14:0 0.6 14 53511 C15:0 1.1 15 53511 C16:0 10.2 16 53511 C18:0 0.7 18 53511 11 methyl 18:1 ω7c 4.7 18.081 53511 C14:0 2OH 2.1 15.205 53511 C15:0 2OH 1.4 16.217 53511 C16:0 2OH 2.4 17.233 53511 C16:1 ω5c 1.7 15.908 53511 C16:1 ω7c 18 15.819 53511 C17:1 ω6c 13.4 16.862 53511 C17:1 ω8c 1.1 16.792 53511 C17:1 ω9c ISO 0.3 16.416 53511 C18:1 ω5c 1.7 17.919 53511 C18:1 ω7c /12t/9t 37.1 17.824 53511 C18:1 ω9c 0.6 17.769 53511 C18:2 ω6,9c/C18:0 ANTE 2.3 17.724 53511 Unidentified 0.9 18.557 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
53511 | - | - | - | - | - | + | - | - | + | - | - | - | - | + | - | - | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 53511
- sample type: Water,municipal drinking water
- sampling date: 1996
- geographic location: Almunge
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
External links
@ref: 53511
culture collection no.: CCUG 36960
straininfo link
- @ref: 103604
- straininfo: 108649
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
53511 | Curators of the CCUG | https://www.ccug.se/strain?id=36960 | Culture Collection University of Gothenburg (CCUG) (CCUG 36960) | |
68369 | Automatically annotated from API 20NE | |||
103604 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID108649.1 |