Strain identifier
BacDive ID: 14914
Type strain: 
Species: Streptomyces albidoflavus
Strain Designation: FBUA 521, BU 3,4, BU 3,5
Strain history: KCC S-0020 <-- Y. Okami (NIHJ 147) <-- T. Yamaguchi <-- IFO 3176 <-- ATCC 10147 <-- S. A. Waksman 3034.
NCBI tax ID(s): 1886 (species)
version 8.1 (current version)
General
@ref: 9948
BacDive-ID: 14914
DSM-Number: 41007
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptomyces albidoflavus FBUA 521 is a mesophilic bacterium that was isolated from soil enriched with dead, dry tubercle bacilli .
NCBI tax id
- NCBI tax id: 1886
- Matching level: species
strain history
| @ref | history |
|---|---|
| 9948 | <- R.E. Gordon <- S.A. Waksman <- Dept. of Microbiol., N.J. A.E.S. |
| 67770 | KCC S-0020 <-- Y. Okami (NIHJ 147) <-- T. Yamaguchi <-- IFO 3176 <-- ATCC 10147 <-- S. A. Waksman 3034. |
doi: 10.13145/bacdive14914.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces albidoflavus
- full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptomyces griseus subsp. solvifaciens 20215 Streptomyces limosus 20215 Actinomyces sampsonii 20215 Actinomyces globisporus subsp. caucasicus 20215 Cladothrix odorifera 20215 Streptomyces felleus 20215 Streptomyces sampsonii 20215 Streptomyces odorifer 20215 Streptomyces coelicolor 20215 Streptothrix coelicolor 20215 Streptotrix albidoflava 20215 Streptomyces globisporus subsp. caucasicus 20215 Streptomyces canescens 20215 Streptomyces champavatii
@ref: 9948
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces albidoflavus
full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 emend. Nouioui et al. 2018
strain designation: FBUA 521, BU 3,4, BU 3,5
type strain: no
Morphology
multimedia
- @ref: 9948
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41007.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9948 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9948 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 9948 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
- @ref: 9948
- sample type: soil enriched with dead, dry tubercle bacilli (H-37 strain)
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_357.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_357&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB184830
- Sequence Identity:
- Total samples: 5402
- soil counts: 2201
- aquatic counts: 991
- animal counts: 1970
- plant counts: 240
Safety information
risk assessment
- @ref: 9948
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Streptomyces violaceoruber gene for 16S rRNA, partial sequence, strain: NBRC 3176
- accession: AB184830
- length: 1478
- database: ena
- NCBI tax ID: 1935
Genome sequences
- @ref: 66792
- description: Streptomyces coelicolor JCM 4020
- accession: GCA_021654815
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1902
GC content
- @ref: 9948
- GC-content: 73.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.803 | no |
| gram-positive | yes | 88.375 | no |
| anaerobic | no | 99.107 | no |
| aerobic | yes | 93.207 | no |
| halophile | no | 92.177 | no |
| spore-forming | yes | 94.239 | no |
| motile | no | 93.743 | no |
| glucose-ferment | no | 89.717 | no |
| thermophile | no | 99.102 | yes |
| glucose-util | yes | 90.653 | no |
External links
@ref: 9948
culture collection no.: DSM 41007, ATCC 10147, ETH 9448, HMGB B 906, IAM 0032, IFO 3176, IMET 40271, IMRU 3034, KCC S-0020, NBRC 3176, NIHJ 147, RIA 73, HUT 6005, PSA 42, JCM 4020, CECT 3243
straininfo link
- @ref: 84023
- straininfo: 46471
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 2272494 | pS10147-2, a 3.7 kb multicopy plasmid isolated from Streptomyces coelicolor. | Zakrzewska-Czerwinska J, Gaszewska A, Mordarski M | FEMS Microbiol Lett | 10.1016/0378-1097(90)90232-f | 1990 | Blotting, Southern, Cloning, Molecular, DNA/analysis, Plasmids/*genetics, Restriction Mapping, Streptomyces/*genetics | |
| Phylogeny | 6267433 | Isolation and physical characterization of streptomycete plasmids. | Pernodet JL, Guerineau M | Mol Gen Genet | 10.1007/BF00422766 | 1981 | DNA Restriction Enzymes/metabolism, DNA, Bacterial/analysis/*isolation & purification, DNA, Circular/isolation & purification, Deoxyribonucleotides/analysis, Microscopy, Electron, Nucleic Acid Hybridization, *Plasmids, Streptomyces/*analysis/genetics | Enzymology |
| Enzymology | 7881556 | Characterization of the major catalase from Streptomyces coelicolor ATCC 10147. | Kim H, Lee JS, Hah YC, Roe JH | Microbiology (Reading) | 10.1099/13500872-140-12-3391 | 1994 | Catalase/chemistry/genetics/*isolation & purification, Enzyme Stability, Escherichia coli/enzymology, Genes, Bacterial, Molecular Weight, Mutagenesis, Spectrophotometry, Streptomyces/*enzymology/genetics/growth & development | Phylogeny |
| Enzymology | 8898904 | Differential expression of superoxide dismutases containing Ni and Fe/Zn in Streptomyces coelicolor. | Kim FJ, Kim HP, Hah YC, Roe JH | Eur J Biochem | 10.1111/j.1432-1033.1996.0178t.x | 1996 | Amino Acid Sequence, Chelating Agents/pharmacology, Edetic Acid/pharmacology, Electrophoresis, Polyacrylamide Gel, Gene Expression Regulation, Fungal/*genetics, Metals, Heavy/analysis/metabolism, Molecular Sequence Data, Nickel/*metabolism/pharmacology, Oxidative Stress, Paraquat/pharmacology, Sequence Homology, Amino Acid, Spectrophotometry, Streptomyces/*enzymology, Superoxide Dismutase/classification/isolation & purification/*metabolism | Metabolism |
| Metabolism | 35834474 | Effects of carbon ion beam-induced mutagenesis for the screening of RED production-deficient mutants of Streptomyces coelicolor JCM4020. | Yanagisawa M, Asamizu S, Satoh K, Oono Y, Onaka H | PLoS One | 10.1371/journal.pone.0270379 | 2022 | Anti-Bacterial Agents/metabolism, Carbon/metabolism, Ions/metabolism, Mutagenesis, *Streptomyces coelicolor/genetics/metabolism, Streptomyces lividans/metabolism | Biotechnology |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 9948 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41007) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41007 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 84023 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46471.1 | StrainInfo: A central database for resolving microbial strain identifiers |