Archive BacDiveID:10.13145/bacdive14914.20240916.9.1

Strain identifier

BacDive ID: 14914

Type strain:

Species: Streptomyces albidoflavus

Strain Designation: FBUA 521, BU 3,4, BU 3,5

Strain history: KCC S-0020 <-- Y. Okami (NIHJ 147) <-- T. Yamaguchi <-- IFO 3176 <-- ATCC 10147 <-- S. A. Waksman 3034.

NCBI tax ID(s): 1886 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 9948

BacDive-ID: 14914

DSM-Number: 41007

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Streptomyces albidoflavus FBUA 521 is a spore-forming bacterium that was isolated from soil enriched with dead, dry tubercle bacilli .

NCBI tax id

NCBI tax id: 1886
Matching level: species

strain history

@ref	history
9948	<- R.E. Gordon <- S.A. Waksman <- Dept. of Microbiol., N.J. A.E.S.
67770	KCC S-0020 <-- Y. Okami (NIHJ 147) <-- T. Yamaguchi <-- IFO 3176 <-- ATCC 10147 <-- S. A. Waksman 3034.

doi: 10.13145/bacdive14914.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces albidoflavus
full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 (Approved Lists 1980)

synonyms

@ref	synonym
20215	Streptomyces griseus subsp. solvifaciens
20215	Streptomyces limosus
20215	Actinomyces sampsonii
20215	Actinomyces globisporus subsp. caucasicus
20215	Cladothrix odorifera
20215	Streptomyces felleus
20215	Streptomyces sampsonii
20215	Streptomyces odorifer
20215	Streptomyces coelicolor
20215	Streptothrix coelicolor
20215	Streptotrix albidoflava
20215	Streptomyces globisporus subsp. caucasicus
20215	Streptomyces canescens
20215	Streptomyces champavatii

@ref: 9948

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albidoflavus

full scientific name: Streptomyces albidoflavus (Rossi Doria 1891) Waksman and Henrici 1948 emend. Nouioui et al. 2018

strain designation: FBUA 521, BU 3,4, BU 3,5

type strain: no

Morphology

multimedia

@ref: 9948
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41007.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
9948	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9948	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@ref	growth	type	temperature
9948	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

spore formation

@ref: 69480
spore formation: yes
confidence: 92.427

Isolation, sampling and environmental information

isolation

@ref: 9948
sample type: soil enriched with dead, dry tubercle bacilli (H-37 strain)

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Terrestrial	#Soil
#Host	#Microbial	#Bacteria

taxonmaps

@ref: 69479
File name: preview.99_357.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_97;98_106;99_357&stattab=map
Last taxonomy: Streptomyces
16S sequence: AB184830
Sequence Identity:
Total samples: 5402
soil counts: 2201
aquatic counts: 991
animal counts: 1970
plant counts: 240

Safety information

risk assessment

@ref: 9948
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 20218
description: Streptomyces violaceoruber gene for 16S rRNA, partial sequence, strain: NBRC 3176
accession: AB184830
length: 1478
database: nuccore
NCBI tax ID: 1935

Genome sequences

@ref: 66792
description: Streptomyces coelicolor JCM 4020
accession: GCA_021654815
assembly level: complete
database: ncbi
NCBI tax ID: 1902

GC content

@ref: 9948
GC-content: 73.0

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	89.27	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	98.383	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	88.928	no
69480	spore-forming	spore-forming	Ability to form endo- or exospores	yes	92.427	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	96.5	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	89	no

External links

@ref: 9948

culture collection no.: DSM 41007, ATCC 10147, ETH 9448, HMGB B 906, IAM 0032, IFO 3176, IMET 40271, IMRU 3034, KCC S-0020, NBRC 3176, NIHJ 147, RIA 73, HUT 6005, PSA 42, JCM 4020, CECT 3243

straininfo link

@ref: 84023
straininfo: 46471

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Enzymology	2272494	pS10147-2, a 3.7 kb multicopy plasmid isolated from Streptomyces coelicolor.	Zakrzewska-Czerwinska J, Gaszewska A, Mordarski M	FEMS Microbiol Lett	10.1016/0378-1097(90)90232-f	1990	Blotting, Southern, Cloning, Molecular, DNA/analysis, Plasmids/genetics, Restriction Mapping, Streptomyces/genetics
Phylogeny	6267433	Isolation and physical characterization of streptomycete plasmids.	Pernodet JL, Guerineau M	Mol Gen Genet	10.1007/BF00422766	1981	DNA Restriction Enzymes/metabolism, DNA, Bacterial/analysis/isolation & purification, DNA, Circular/isolation & purification, Deoxyribonucleotides/analysis, Microscopy, Electron, Nucleic Acid Hybridization, Plasmids, Streptomyces/*analysis/genetics	Enzymology
Enzymology	7881556	Characterization of the major catalase from Streptomyces coelicolor ATCC 10147.	Kim H, Lee JS, Hah YC, Roe JH	Microbiology (Reading)	10.1099/13500872-140-12-3391	1994	Catalase/chemistry/genetics/isolation & purification, Enzyme Stability, Escherichia coli/enzymology, Genes, Bacterial, Molecular Weight, Mutagenesis, Spectrophotometry, Streptomyces/enzymology/genetics/growth & development	Phylogeny
Enzymology	8898904	Differential expression of superoxide dismutases containing Ni and Fe/Zn in Streptomyces coelicolor.	Kim FJ, Kim HP, Hah YC, Roe JH	Eur J Biochem	10.1111/j.1432-1033.1996.0178t.x	1996	Amino Acid Sequence, Chelating Agents/pharmacology, Edetic Acid/pharmacology, Electrophoresis, Polyacrylamide Gel, Gene Expression Regulation, Fungal/genetics, Metals, Heavy/analysis/metabolism, Molecular Sequence Data, Nickel/metabolism/pharmacology, Oxidative Stress, Paraquat/pharmacology, Sequence Homology, Amino Acid, Spectrophotometry, Streptomyces/enzymology, Superoxide Dismutase/classification/isolation & purification/metabolism	Metabolism
Metabolism	35834474	Effects of carbon ion beam-induced mutagenesis for the screening of RED production-deficient mutants of Streptomyces coelicolor JCM4020.	Yanagisawa M, Asamizu S, Satoh K, Oono Y, Onaka H	PLoS One	10.1371/journal.pone.0270379	2022	Anti-Bacterial Agents/metabolism, Carbon/metabolism, Ions/metabolism, Mutagenesis, *Streptomyces coelicolor/genetics/metabolism, Streptomyces lividans/metabolism	Biotechnology

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
9948	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41007)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-41007
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
84023	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID46471.1	StrainInfo: A central database for resolving microbial strain identifiers