Strain identifier

BacDive ID: 149030

Type strain: No

Species: Chryseobacterium hominis

NCBI tax ID(s): 420404 (species)

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General

@ref: 53368

BacDive-ID: 149030

keywords: 16S sequence, Bacteria

description: Chryseobacterium hominis CCUG 36748 is a bacterium that was isolated from Human aortic valve.

NCBI tax id

  • NCBI tax id: 420404
  • Matching level: species

doi: 10.13145/bacdive149030.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium hominis
  • full scientific name: Chryseobacterium hominis Vaneechoutte et al. 2007

  • synonyms

    @refsynonym
    20215Chryseobacterium arothri
    20215Epilithonimonas hominis

@ref: 53368

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium hominis

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53368C16:0116
    53368C18:01.218
    53368C13:0 iso2.412.612
    53368C14:0 ISO1.713.618
    53368C15:0 ANTEISO11.714.711
    53368C15:0 ISO33.514.621
    53368C15:0 ISO 3OH416.135
    53368C16:1 ISO H0.515.461
    53368C16:1 ω7c/C15:0 ISO 2OH10.315.85
    53368C17:0 iso 3OH11.918.161
    53368C17:1 ISO I/C16:0 DMA1.116.481
    53368C17:1 ω9c ISO14.116.416
    53368C18:2 ω6,9c/C18:0 ANTE1.417.724
    53368Unidentified1.117.159
    53368Unidentified2.117.935
    53368Unidentified1.218.27
    53368unknown 16.5800.916.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
53368-+++-++---++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
53368++---++-+-+--+------+

Isolation, sampling and environmental information

isolation

  • @ref: 53368
  • sample type: Human aortic valve
  • sampling date: 1963
  • geographic location: Colorado
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Organ#Heart
#Host Body-Site#Organ#Vascular system
#Infection#Patient

Sequence information

16S sequences

  • @ref: 124043
  • description: Chryseobacterium hominis partial 16S rRNA gene, strain CCUG 36748
  • accession: AM423088
  • length: 1339
  • database: nuccore
  • NCBI tax ID: 420404

External links

@ref: 53368

culture collection no.: CCUG 36748

straininfo link

  • @ref: 103498
  • straininfo: 10520

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53368Curators of the CCUGhttps://www.ccug.se/strain?id=36748Culture Collection University of Gothenburg (CCUG) (CCUG 36748)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
103498Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10520.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy