Strain identifier
version 8.1 (current version)
General
@ref: 53164
BacDive-ID: 148834
keywords: Bacteria, microaerophile, mesophilic
description: Avibacterium paragallinarum CCUG 36042 is a microaerophile, mesophilic bacterium that was isolated from Chicken eye.
NCBI tax id
- NCBI tax id: 728
- Matching level: species
doi: 10.13145/bacdive148834.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Avibacterium
- species: Avibacterium paragallinarum
- full scientific name: Avibacterium paragallinarum (Biberstein and White 1969) Blackall et al. 2005
synonyms
- @ref: 20215
- synonym: Haemophilus paragallinarum
@ref: 53164
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Avibacterium
species: Avibacterium paragallinarum
type strain: no
Culture and growth conditions
culture temp
- @ref: 53164
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 53164
- oxygen tolerance: microaerophile
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 17634 | D-glucose | + | builds acid from |
| 68377 | 15824 | D-fructose | + | builds acid from |
| 68377 | 17306 | maltose | - | builds acid from |
| 68377 | 17992 | sucrose | + | builds acid from |
| 68377 | 18257 | ornithine | - | degradation |
| 68377 | 16199 | urea | - | hydrolysis |
| 68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68377 | tryptophan deaminase | - | 4.1.99.1 |
| 68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68377 | proline-arylamidase | - | 3.4.11.5 |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | alkaline phosphatase | + | 3.1.3.1 |
| 68377 | lipase | - | |
| 68377 | urease | - | 3.5.1.5 |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 |
| 68377 | beta-lactamase | - | 3.5.2.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53164 C12:0 0.2 12 53164 C14:0 12.2 14 53164 C16:0 36.8 16 53164 C18:0 3.7 18 53164 C20:0 0.3 20 53164 C13:0 ISO 2OH 0.3 13.814 53164 C14:0 3OH/C16:1 ISO I 5.4 15.485 53164 C16:1 ω7c 32.1 15.819 53164 C16:1 ω9c 0.3 15.774 53164 C18:1 ω7c /12t/9t 1.4 17.824 53164 C18:1 ω9c 2.6 17.769 53164 C18:2 ω6,9c/C18:0 ANTE 4.2 17.724 53164 C20:1 ω7c 0.5 19.833 53164 unknown 14.503 0.3 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53164 | - | + | + | - | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 53164
- sample type: Chicken eye
- sampling date: 1970
- geographic location: Hannover
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Birds | #Chicken |
| #Host Body-Site | #Organ | #Eye |
External links
@ref: 53164
culture collection no.: CCUG 36042, MCCM 01270
straininfo link
- @ref: 103327
- straininfo: 54507
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 53164 | Curators of the CCUG | https://www.ccug.se/strain?id=36042 | Culture Collection University of Gothenburg (CCUG) (CCUG 36042) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 68377 | Automatically annotated from API NH | |||||
| 103327 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54507.1 |