Strain identifier

BacDive ID: 148833

Type strain: No

Species: Avibacterium paragallinarum

NCBI tax ID(s): 728 (species)

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General

@ref: 53163

BacDive-ID: 148833

keywords: Bacteria, microaerophile, mesophilic

description: Avibacterium paragallinarum CCUG 36041 is a microaerophile, mesophilic bacterium that was isolated from Chicken,sinus exudatem.

NCBI tax id

  • NCBI tax id: 728
  • Matching level: species

doi: 10.13145/bacdive148833.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Avibacterium
  • species: Avibacterium paragallinarum
  • full scientific name: Avibacterium paragallinarum (Biberstein and White 1969) Blackall et al. 2005

  • synonyms

    • @ref: 20215
    • synonym: Haemophilus paragallinarum

@ref: 53163

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Avibacterium

species: Avibacterium paragallinarum

type strain: no

Culture and growth conditions

culture temp

  • @ref: 53163
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 53163
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53163C12:00.312
    53163C14:013.114
    53163C16:039.216
    53163C18:01.718
    53163C13:0 ISO 2OH0.613.814
    53163C14:0 3OH/C16:1 ISO I6.315.485
    53163C16:1 ω7c24.615.819
    53163C18:1 ω7c /12t/9t9.817.824
    53163C18:1 ω9c1.317.769
    53163C18:2 ω6,9c/C18:0 ANTE1.917.724
    53163Unidentified0.510.916
    53163Unidentified0.215.176
    53163unknown 14.5030.614.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
53163-+---+----+----+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
53163-++-----+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 53163
  • sample type: Chicken,sinus exudatem
  • sampling date: 1971
  • geographic location: Hannover
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Birds
  • Cat3: #Chicken

External links

@ref: 53163

culture collection no.: CCUG 36041, MCCM 01288

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53163Curators of the CCUGhttps://www.ccug.se/strain?id=36041Culture Collection University of Gothenburg (CCUG) (CCUG 36041)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68377Automatically annotated from API NH
68382Automatically annotated from API zym