Strain identifier

BacDive ID: 148727

Type strain: No

Species: Bergeyella zoohelcum

NCBI tax ID(s): 1015 (species)

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General

@ref: 53055

BacDive-ID: 148727

keywords: Bacteria

description: Bergeyella zoohelcum CCUG 35864 is a bacterium that was isolated from Human wound,52-yr-old woman,finger,dog bite.

NCBI tax id

  • NCBI tax id: 1015
  • Matching level: species

doi: 10.13145/bacdive148727.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Bergeyella
  • species: Bergeyella zoohelcum
  • full scientific name: Bergeyella zoohelcum (Holmes et al. 1987) Vandamme et al. 1994

  • synonyms

    • @ref: 20215
    • synonym: Weeksella zoohelcum

@ref: 53055

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bergeyella

species: Bergeyella zoohelcum

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea+hydrolysis
6837727897tryptophan+energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68377tryptophan deaminase+4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase+
68377urease+3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    53055C16:01.516
    53055C18:00.718
    53055C13:0 iso2.412.612
    53055C15:0 ANTEISO0.814.711
    53055C15:0 ISO5414.621
    53055C15:0 ISO 3OH3.616.135
    53055C16:1 ω7c/C15:0 ISO 2OH8.115.85
    53055C17:0 iso0.316.629
    53055C17:0 iso 3OH10.618.161
    53055C17:1 ISO I/C16:0 DMA0.616.481
    53055C17:1 ω9c ISO8.116.416
    53055C18:1 ω9c1.617.769
    53055C18:2 ω6,9c/C18:0 ANTE2.717.724
    53055Unidentified3.813.576
    53055Unidentified0.517.932
    53055unknown 16.5800.816.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
53055-+++-+++--++--------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
53055------+++--++

Isolation, sampling and environmental information

isolation

  • @ref: 53055
  • sample type: Human wound,52-yr-old woman,finger,dog bite
  • sampling date: 1996-05-11
  • geographic location: Borås
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Other#Wound
#Infection#Patient

External links

@ref: 53055

culture collection no.: CCUG 35864

straininfo link

  • @ref: 103232
  • straininfo: 51918

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
53055Curators of the CCUGhttps://www.ccug.se/strain?id=35864Culture Collection University of Gothenburg (CCUG) (CCUG 35864)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
103232Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51918.1