Strain identifier

BacDive ID: 14845

Type strain: Yes

Species: Streptococcus porci

Strain Designation: 2923-03

Strain history: <- CCUG <- A. I. Vela, Univ. Complutense Madrid, Spain

NCBI tax ID(s): 1123315 (strain), 502567 (species)

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General

@ref: 17306

BacDive-ID: 14845

DSM-Number: 23759

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, animal pathogen

description: Streptococcus porci 2923-03 is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from heart of a pig with pericarditis.

NCBI tax id

NCBI tax idMatching level
1123315strain
502567species

strain history

  • @ref: 17306
  • history: <- CCUG <- A. I. Vela, Univ. Complutense Madrid, Spain

doi: 10.13145/bacdive14845.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus porci
  • full scientific name: Streptococcus porci Vela et al. 2010

@ref: 17306

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus porci

full scientific name: Streptococcus porci Vela et al. 2010

strain designation: 2923-03

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotilityconfidence
29340positive0.4 µmcoccus-shapedno
69480no94.963
69480positive100

colony morphology

@reftype of hemolysishemolysis ability
17306beta1
68370beta1

pigmentation

  • @ref: 29340
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17306TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
17306COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
17306positivegrowth37mesophilic
29340positivegrowth37mesophilic
60781positivegrowth30-37mesophilic

culture pH

  • @ref: 29340
  • ability: positive
  • type: growth
  • pH: 9.6
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17306microaerophile
29340facultative anaerobe
60781microaerophile

spore formation

@refspore formationconfidence
29340no
69481no100
69480no99.994

observation

  • @ref: 29340
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2934017057cellobiose+carbon source
2934028757fructose+carbon source
2934028260galactose+carbon source
2934017234glucose+carbon source
2934017716lactose+carbon source
2934017306maltose+carbon source
2934037684mannose+carbon source
2934028053melibiose+carbon source
29340506227N-acetylglucosamine+carbon source
2934016634raffinose+carbon source
2934017814salicin+carbon source
2934017992sucrose+carbon source
2934027082trehalose+carbon source
2934018222xylose+carbon source
6837028087glycogen+builds acid from
6837028017starch+builds acid from
6837016634raffinose+builds acid from
6837015443inulin-builds acid from
6837027082trehalose+builds acid from
6837017716lactose+builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose+builds acid from
6837016988D-ribose-builds acid from
6837029016arginine-hydrolysis
683704853esculin+hydrolysis
68370606565hippurate-hydrolysis
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose+builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837015688acetoinno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin-

enzymes

@refvalueactivityec
17306catalase-1.11.1.6
17306cytochrome-c oxidase-1.9.3.1
29340alpha-galactosidase+3.2.1.22
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68370arginine dihydrolase-3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase-3.1.3.1
68370beta-galactosidase+3.2.1.23
68370beta-glucuronidase-3.2.1.31
68370alpha-galactosidase+3.2.1.22
68370pyrrolidonyl arylamidase-3.4.19.3
68370beta-glucosidase+3.2.1.21

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
17306--+-+-+-+--+--++-++++

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
17306-++-+----++++--+-++--+--++---+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic location
17306heart of a pig with pericarditisSpainESPEurope
60781Pig heart,pericarditisSpainESPEurope2003Madrid

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Organ#Heart

Safety information

risk assessment

  • @ref: 17306
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17306
  • description: Streptococcus porci partial 16S rRNA gene, type strain 2923-03T
  • accession: AM941160
  • length: 1388
  • database: ena
  • NCBI tax ID: 502567

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus porci DSM 23759GCA_000423765scaffoldncbi1123315
66792Streptococcus porci DSM 237591123315.3wgspatric1123315
66792Streptococcus porci DSM 237592523533542draftimg1123315

GC content

@refGC-contentmethod
1730641.5high performance liquid chromatography (HPLC)
2934041.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.797yes
flagellatedno96.178no
gram-positiveyes91.919yes
anaerobicno91.777yes
aerobicno97.738yes
halophileyes67.589no
spore-formingno95.403yes
thermophileno99.771yes
glucose-utilyes88.268yes
glucose-fermentyes80.897no

External links

@ref: 17306

culture collection no.: DSM 23759, CCUG 55896, CECT 7374

straininfo link

  • @ref: 83958
  • straininfo: 363843

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19648324Streptococcus porci sp. nov., isolated from swine sources.Vela AI, Perez M, Zamora L, Palacios L, Dominguez L, Fernandez-Garayzabal JFInt J Syst Evol Microbiol10.1099/ijs.0.011171-02009Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptococcus/*classification/genetics/*isolation & purification/metabolism, Swine/*microbiologyGenetics
Phylogeny26486442Streptococcus caprae sp. nov., isolated from Iberian ibex (Capra pyrenaica hispanica).Vela AI, Mentaberre G, Lavin S, Dominguez L, Fernandez-Garayzabal JFInt J Syst Evol Microbiol10.1099/ijsem.0.0006972015Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Goats/*microbiology, Molecular Sequence Data, Palatine Tonsil/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Streptococcus/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17306Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23759)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23759
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29340Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2575228776041
60781Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55896)https://www.ccug.se/strain?id=55896
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83958Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363843.1StrainInfo: A central database for resolving microbial strain identifiers