Strain identifier

BacDive ID: 14835

Type strain: Yes

Species: Streptococcus marimammalium

Strain Designation: M54/01/1

Strain history: CIP <- 2004, CCUG <- N. Davison, VLA Truro, Cornwall, England: strain SAC M54/01/1

NCBI tax ID(s): 1123306 (strain), 269666 (species)

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General

@ref: 7627

BacDive-ID: 14835

DSM-Number: 18627

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, animal pathogen

description: Streptococcus marimammalium M54/01/1 is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from grey seal .

NCBI tax id

NCBI tax idMatching level
1123306strain
269666species

strain history

@refhistory
7627<- CCUG <- G. Foster <- N. Davison
120795CIP <- 2004, CCUG <- N. Davison, VLA Truro, Cornwall, England: strain SAC M54/01/1

doi: 10.13145/bacdive14835.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus marimammalium
  • full scientific name: Streptococcus marimammalium Lawson et al. 2005

@ref: 7627

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus marimammalium

full scientific name: Streptococcus marimammalium Lawson et al. 2005

strain designation: M54/01/1

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31336positivecoccus-shaped
69480no92.925
69480positive100
120795positivecoccus-shapedno

colony morphology

@refincubation period
76271-2 days
120795

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7627TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7627COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
33936MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120795CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
7627positivegrowth37mesophilic
33936positivegrowth37mesophilic
120795positivegrowth25-37mesophilic
120795nogrowth10psychrophilic
120795nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7627microaerophile
31336facultative anaerobe
120795facultative anaerobe

spore formation

@refspore formationconfidence
31336no
69481no100
69480no99.997

halophily

  • @ref: 120795
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

observation

  • @ref: 31336
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3133617716lactose+carbon source
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6837028087glycogen-builds acid from
6837028017starch-builds acid from
6837016634raffinose-builds acid from
6837015443inulin-builds acid from
6837027082trehalose-builds acid from
6837017716lactose+builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose-builds acid from
6837016988D-ribose-builds acid from
6837029016arginine+hydrolysis
683704853esculin-hydrolysis
68370606565hippurate+hydrolysis
1207954853esculin-hydrolysis
120795606565hippurate+hydrolysis
12079517632nitrate-reduction
12079516301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

antibiotic resistance

  • @ref: 120795
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837015688acetoinyes
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-
6837015688acetoin+
12079515688acetoin-

enzymes

@refvalueactivityec
31336alkaline phosphatase+3.1.3.1
31336urease+3.5.1.5
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68370arginine dihydrolase+3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase-3.1.3.1
68370beta-galactosidase+3.2.1.23
68370beta-glucuronidase-3.2.1.31
68370alpha-galactosidase-3.2.1.22
68370pyrrolidonyl arylamidase+3.4.19.3
68370beta-glucosidase-3.2.1.21
120795oxidase-
120795beta-galactosidase-3.2.1.23
120795alcohol dehydrogenase-1.1.1.1
120795catalase-1.11.1.6
120795gamma-glutamyltransferase+2.3.2.2
120795lysine decarboxylase-4.1.1.18
120795ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120795-+++-++--+++---+----

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
7627++-+--+-++----+------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120795---------++-+--------+-----++-------------------+/-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
7627---+------+------+--++-++-+-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
7627--++-------------+----+---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7627grey seal (Halichoerius grypus)CornwallUnited KingdomGBREurope
58189Grey seal (Halichoerius grypus)CornwallUnited KingdomGBREurope
120795Grey sealUnited KingdomGBREurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7627yes, in single cases1Risk group (German classification)
1207952Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7627
  • description: Streptococcus marimammalium 16S rRNA gene, type strain M54/01/1T
  • accession: AJ634751
  • length: 1500
  • database: ena
  • NCBI tax ID: 269666

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus marimammalium DSM 18627GCA_000380045scaffoldncbi1123306
66792Streptococcus marimammalium DSM 186271123306.3wgspatric1123306
66792Streptococcus marimammalium DSM 186272515154020draftimg1123306

GC content

  • @ref: 31336
  • GC-content: 38

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.16no
flagellatedno98.395no
gram-positiveyes94.435yes
anaerobicno95.809yes
aerobicno97.727yes
halophileyes83.005no
spore-formingno95.646yes
thermophileno98.999yes
glucose-utilyes87.724no
glucose-fermentyes78.792no

External links

@ref: 7627

culture collection no.: DSM 18627, CCUG 48494, CIP 108309, SAC M54/01/1

straininfo link

  • @ref: 83951
  • straininfo: 135127

literature

  • topic: Phylogeny
  • Pubmed-ID: 15653886
  • title: Streptococcus marimammalium sp. nov., isolated from seals.
  • authors: Lawson PA, Foster G, Falsen E, Collins MD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63342-0
  • year: 2005
  • mesh: Animals, Bacterial Proteins/analysis, Bacterial Typing Techniques, DNA, Ribosomal/analysis, Electrophoresis, Polyacrylamide Gel, Genes, rRNA, Molecular Sequence Data, Phenotype, Phoca/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seals, Earless/*microbiology, Sequence Analysis, DNA, Streptococcal Infections/microbiology/*veterinary, Streptococcus/chemistry/*classification/genetics/*isolation & purification
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7627Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18627)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18627
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31336Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2765028776041
33936Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5917
58189Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48494)https://www.ccug.se/strain?id=48494
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68370Automatically annotated from API 20STR
68371Automatically annotated from API 50CH acid
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83951Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135127.1StrainInfo: A central database for resolving microbial strain identifiers
120795Curators of the CIPCollection of Institut Pasteur (CIP 108309)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108309