Strain identifier

BacDive ID: 14809

Type strain: Yes

Species: Streptococcus entericus

Strain history: CIP <- 2002, CCUG <- 2000, CECT <- J.F. Fernandez-Garayzabal, Madrid, Spain <- M.V. Latre-Cequiel

NCBI tax ID(s): 1123302 (strain), 155680 (species)

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General

@ref: 5359

BacDive-ID: 14809

DSM-Number: 14446

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen

description: Streptococcus entericus DSM 14446 is a microaerophile, mesophilic animal pathogen that was isolated from intestine of cow.

NCBI tax id

NCBI tax idMatching level
155680species
1123302strain

strain history

@refhistory
5359<- CECT <- J.F. Fernández-Garayzábal <- M.V. Latre
67770CCUG 44616 <-- CECT 5353 <-- J. F. Fernández-Garayzábal.
119056CIP <- 2002, CCUG <- 2000, CECT <- J.F. Fernandez-Garayzabal, Madrid, Spain <- M.V. Latre-Cequiel

doi: 10.13145/bacdive14809.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus entericus
  • full scientific name: Streptococcus entericus Vela et al. 2002

@ref: 5359

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus entericus

full scientific name: Streptococcus entericus Vela et al. 2002

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no92.687
69480100positive
119056nopositiveovoid-shaped

colony morphology

@reftype of hemolysisincubation periodhemolysis ability
5359gamma
564052 days
1190561

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5359COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5359TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
33127MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119056CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5359positivegrowth37mesophilic
33127positivegrowth37mesophilic
56405positivegrowth37mesophilic
67770positivegrowth37mesophilic
119056positivegrowth25-41
119056nogrowth10psychrophilic
119056nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5359microaerophile
119056facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

halophily

  • @ref: 119056
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68370glycogen+builds acid from28087
68370starch+builds acid from28017
68370raffinose-builds acid from16634
68370inulin-builds acid from15443
68370trehalose+builds acid from27082
68370lactose+builds acid from17716
68370D-sorbitol-builds acid from17924
68370D-mannitol-builds acid from16899
68370L-arabinose-builds acid from30849
68370D-ribose-builds acid from16988
68370arginine-hydrolysis29016
68370esculin+hydrolysis4853
68370hippurate-hydrolysis606565
119056esculin+hydrolysis4853
119056hippurate+hydrolysis606565
119056nitrate-reduction17632
119056nitrite-reduction16301
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381trehalose+builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381hippurate-hydrolysis606565
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 119056
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837015688acetoinno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin-
11905615688acetoin-

enzymes

@refvalueactivityec
5359catalase-1.11.1.6
5359cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68370arginine dihydrolase-3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase-3.1.3.1
68370beta-galactosidase+3.2.1.23
68370beta-glucuronidase-3.2.1.31
68370alpha-galactosidase-3.2.1.22
68370pyrrolidonyl arylamidase-3.4.19.3
68370beta-glucosidase+3.2.1.21
119056oxidase-
119056beta-galactosidase+3.2.1.23
119056alcohol dehydrogenase-1.1.1.1
119056catalase-1.11.1.6
119056gamma-glutamyltransferase-2.3.2.2
119056lysine decarboxylase-4.1.1.18
119056ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119056-+++-+----++-+-+-+--

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYGbeta HEM
5359--+---+-+-----++--++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119056---------++++--------++/-++++++-++---++-++/---------+/-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
5359-++------+/-+-+--+/--+---+-+/--+--+/----
5359-++-------+-+--+-+---+-+-+--+---
5359-++-------+-+--+-+---+-+-+--+---
5359-++--+/----++-+--+-++--+-+++--+---

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
5359intestine of cowSpainESPEurope
56405Cow intestine,cow enteritisSpainESPEurope1999Zaragoza
67770Intestine of a cow affected with catarrhal enteritis
119056Animal, Cow intestineSpainESPEurope1999

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
5359yes, in single cases1Risk group (German classification)
1190562Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus entericus 16S ribosomal RNA gene, partial sequenceEF151156475ena155680
5359Streptococcus entericus 16S rRNA gene, strain CECT 5353AJ4092871335ena155680
67770Streptococcus entericus gene for 16S ribosomal RNA, partial sequence, strain: JCM 12180LC1455661501ena155680

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus entericus DSM 144461123302.3wgspatric1123302
66792Streptococcus entericus DSM 144462515154023draftimg1123302
67770Streptococcus entericus DSM 14446GCA_000380025scaffoldncbi1123302

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.468no
flagellatedno97.029no
gram-positiveyes89.913no
anaerobicno95.515no
aerobicno96.854yes
halophileyes83.313no
spore-formingno93.886no
thermophileno99.791yes
glucose-utilyes87.599no
glucose-fermentyes74.401no

External links

@ref: 5359

culture collection no.: DSM 14446, CCUG 44616, CECT 5353, CIP 107435, LMG 21848, JCM 12180

straininfo link

  • @ref: 83926
  • straininfo: 87847

literature

  • topic: Phylogeny
  • Pubmed-ID: 11931181
  • title: Streptococcus entericus sp. nov., isolated from cattle intestine.
  • authors: Vela AI, Fernandez E, Lawson PA, Latre MV, Falsen E, Dominguez L, Collins MD, Fernandez-Garayzabal JF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-2-665
  • year: 2002
  • mesh: Animals, Animals, Suckling, Cattle, Cattle Diseases/*microbiology, Diarrhea/microbiology/*veterinary, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Species Specificity, Streptococcal Infections/microbiology/*veterinary, Streptococcus/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5359Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14446)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14446
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33127Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4870
56405Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 44616)https://www.ccug.se/strain?id=44616
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68370Automatically annotated from API 20STR
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83926Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87847.1StrainInfo: A central database for resolving microbial strain identifiers
119056Curators of the CIPCollection of Institut Pasteur (CIP 107435)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107435