Strain identifier

BacDive ID: 14798

Type strain: No

Species: Streptococcus suis

Strain Designation: T 639

Strain history: <- NCTC <- B. Perch, T 639

NCBI tax ID(s): 1214160 (strain), 1307 (species)

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General

@ref: 3685

BacDive-ID: 14798

DSM-Number: 9684

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Streptococcus suis T 639 is a microaerophile, mesophilic bacterium that was isolated from brain of pig.

NCBI tax id

NCBI tax idMatching level
1214160strain
1307species

strain history

  • @ref: 3685
  • history: <- NCTC <- B. Perch, T 639

doi: 10.13145/bacdive14798.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus suis
  • full scientific name: Streptococcus suis (ex Elliott 1966) Kilpper-Bälz and Schleifer 1987

@ref: 3685

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus suis

full scientific name: Streptococcus suis (ex Elliott 1966) Kilpper-Bälz and Schleifer 1987

strain designation: T 639

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no96.92
69480100positive

colony morphology

  • @ref: 3685
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 3685
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 3685
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 3685
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.997

murein

  • @ref: 3685
  • murein short key: A11
  • type: A1alpha L-Lys-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
3685catalase-1.11.1.6
3685cytochrome-c oxidase-1.9.3.1
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase+3.2.1.21

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
45065-++++----+-++----+------++--+---
3685+++++----++++----+++/-+/-+--++--+-+/-+/-

Isolation, sampling and environmental information

isolation

@refsample type
3685brain of pig
45065Pig brain

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Organ#Brain

Safety information

risk assessment

  • @ref: 3685
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus suis NCTC10446GCA_901543985contigncbi1307
66792Streptococcus suis NCTC 10446GCA_000440835contigncbi1214160
66792Streptococcus suis strain NCTC104461307.2417wgspatric1307

GC content

  • @ref: 3685
  • GC-content: 40.0
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.785no
gram-positiveyes94.924no
anaerobicno96.953no
halophileyes78.924no
spore-formingno95.81no
thermophileno99.396yes
glucose-utilyes89.091no
aerobicno96.858yes
flagellatedno96.303no
glucose-fermentyes88.343no

External links

@ref: 3685

culture collection no.: DSM 9684, CCUG 7986, NCTC 10446

straininfo link

  • @ref: 83915
  • straininfo: 7024

Reference

@idauthorscataloguedoi/urltitle
3685Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9684)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9684
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
45065Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 7986)https://www.ccug.se/strain?id=7986
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83915Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7024.1StrainInfo: A central database for resolving microbial strain identifiers