Strain identifier

BacDive ID: 147897

Type strain: No

Species: Clostridium sp.

NCBI tax ID(s): 1506 (species)

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General

@ref: 52121

BacDive-ID: 147897

keywords: Bacteria

description: Clostridium sp. CCUG 34451 is a bacterium that was isolated from Human wound.

NCBI tax id

  • NCBI tax id: 1506
  • Matching level: species

doi: 10.13145/bacdive147897.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium sp.
  • full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Tyzzerella
    20215Pseudoclostridium
    20215Lachnoclostridium
    20215Anaerobacter
    20215Inflabilis

@ref: 52121

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium sp.

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52121C12:02.312
    52121C14:09.914
    52121C16:017.216
    52121C13:0 3OH/C15:1 i I/H1.614.469
    52121C16:0 10-methyl15.616.433
    52121C16:1 ω7c1.715.819
    52121C16:1 ω7c DMA3.516.288
    52121C16:1 ω9c2.515.774
    52121C16:1 ω9c DMA4.916.242
    52121C17:0 anteiso1.116.722
    52121C17:0 CYCLO DMA1.717.357
    52121C17:1 ω7c216.818
    52121C17:1 ω9c116.773
    52121C18:1 ω6c1.917.858
    52121C18:1 ω7c /12t/9t2.317.824
    52121C18:1 ω7c DMA5.218.282
    52121C18:1 ω9c DMA3.118.226
    52121C18:2 ω6,9c/C18:0 ANTE4.817.724
    52121C19:1 ISO I2.518.473
    52121unknown 14.7762.314.776
    52121unknown 14.9664.914.966
    52121unknown 16.9721.416.972
    52121unknown 18.1943.218.194
    52121unknown 19.3203.619.32
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
52121-+------+-+-+----+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 52121
  • sample type: Human wound
  • sampling date: 1995-05-27
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound

External links

@ref: 52121

culture collection no.: CCUG 34451

straininfo link

  • @ref: 102543
  • straininfo: 52843

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
52121Curators of the CCUGhttps://www.ccug.se/strain?id=34451Culture Collection University of Gothenburg (CCUG) (CCUG 34451)
68380Automatically annotated from API rID32A
102543Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID52843.1