Strain identifier

BacDive ID: 14788

Type strain: Yes

Species: Streptococcus parauberis

Strain Designation: BC45 RH

Strain history: CIP <- 1994, NCDO <- F.K. Neave, NIRD, UK: strain BC45 RH

NCBI tax ID(s): 1348 (species)

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General

@ref: 2637

BacDive-ID: 14788

DSM-Number: 6631

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, animal pathogen

description: Streptococcus parauberis BC45 RH is a microaerophile, mesophilic, Gram-positive animal pathogen that was isolated from mastitis sample milk.

NCBI tax id

  • NCBI tax id: 1348
  • Matching level: species

strain history

@refhistory
2637<- NCFB <- F.K. Naeve, BC45 RH
121596CIP <- 1994, NCDO <- F.K. Neave, NIRD, UK: strain BC45 RH

doi: 10.13145/bacdive14788.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus parauberis
  • full scientific name: Streptococcus parauberis Williams and Collins 1990

@ref: 2637

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus parauberis

full scientific name: Streptococcus parauberis Williams and Collins 1990

strain designation: BC45 RH

type strain: yes

Morphology

cell morphology

  • @ref: 121596
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysis
2637gamma
121596

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2637COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
2637TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34600MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121596CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
121596CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2637positivegrowth37mesophilic
34600positivegrowth37
55007positivegrowth37
121596positivegrowth10-37
121596nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
55007microaerophile
121596facultative anaerobe

halophily

  • @ref: 121596
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose+builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol+builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
121596nitrate-reduction17632
121596nitrite-reduction16301
68381arginine+hydrolysis29016
68381D-ribose+builds acid from16988
68381D-mannitol+builds acid from16899
68381sorbitol+builds acid from30911
68381lactose+builds acid from17716
68381trehalose+builds acid from27082
68381raffinose+builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate+hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan-builds acid from27941
68381maltose+builds acid from17306
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside+builds acid from320055
68381D-tagatose+builds acid from16443
68381urea-hydrolysis16199

antibiotic resistance

  • @ref: 121596
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
2637catalase-1.11.1.6
2637cytochrome-c oxidase+1.9.3.1
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6
121596alcohol dehydrogenase+/-1.1.1.1
121596catalase-1.11.1.6
121596lysine decarboxylase-4.1.1.18
121596ornithine decarboxylase-4.1.1.17

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121596+/----+----++++--+-++--++++++++/--++------++/--+------+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
2637+++-++/-+++++++---++-++/--+--++-+++-
2637++--+-+++++++---++----+--+--++--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
2637mastitis sample milk
55007Milk,mastitis
121596Food, Milk, mastitis sampleUnited KingdomGBREurope1970

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Milk
#Host Body Product#Other#Animal produced food (natural)
#Host Body-Site#Organ#Mammary gland
#Infection#Inflammation

taxonmaps

  • @ref: 69479
  • File name: preview.99_320.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_79;97_244;98_273;99_320&stattab=map
  • Last taxonomy: Streptococcus parauberis subclade
  • 16S sequence: AY584477
  • Sequence Identity:
  • Total samples: 28029
  • soil counts: 1675
  • aquatic counts: 3071
  • animal counts: 22670
  • plant counts: 613

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
2637yes2Risk group (German classification)
1215962Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptococcus parauberis strain DSM 6631 16S ribosomal RNA gene, partial sequenceJN630843803ena1348
20218Streptococcus parauberis strain LMG 14376 16S ribosomal RNA gene, partial sequenceAY9425731459ena1348
20218Streptococcus parauberis 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF255656464ena1348
2637Streptococcus parauberis strain DSM 6631 16S ribosomal RNA gene, partial sequenceAY5844771471ena1348

GC content

  • @ref: 2637
  • GC-content: 36.0
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2637

culture collection no.: DSM 6631, NCDO 2020, CCUG 39954, NCIMB 702020, CIP 103956

straininfo link

  • @ref: 83905
  • straininfo: 2268

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1695217Molecular taxonomic studies on Streptococcus uberis types I and II. Description of Streptococcus parauberis sp. nov.Williams AM, Collins MDJ Appl Bacteriol10.1111/j.1365-2672.1990.tb02900.x1990Base Sequence, Molecular Sequence Data, Nucleic Acid Conformation, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal/*genetics, RNA, Ribosomal, 16S/*genetics, RNA-Directed DNA Polymerase, Sequence Homology, Nucleic Acid, Streptococcus/*classification/geneticsGenetics
Phylogeny23264498Streptococcus hongkongensis sp. nov., isolated from a patient with an infected puncture wound and from a marine flatfish.Lau SKP, Curreem SOT, Lin CCN, Fung AMY, Yuen KY, Woo PCYInt J Syst Evol Microbiol10.1099/ijs.0.045120-02012Adult, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Flatfishes/*microbiology, Genes, Bacterial, Humans, Male, Molecular Sequence Data, Nucleic Acid Hybridization, Occupational Exposure, *Phylogeny, *Punctures, RNA, Ribosomal, 16S/genetics, Streptococcal Infections/*microbiology, Streptococcus/*classification/genetics/isolation & purificationPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2637Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6631)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6631
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34600Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15810
55007Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 39954)https://www.ccug.se/strain?id=39954
68371Automatically annotated from API 50CH acid
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83905Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2268.1StrainInfo: A central database for resolving microbial strain identifiers
121596Curators of the CIPCollection of Institut Pasteur (CIP 103956)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103956