Strain identifier

BacDive ID: 146960

Type strain: No

Species: Agrobacterium radiobacter

NCBI tax ID(s): 358 (species)

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General

@ref: 51058

BacDive-ID: 146960

keywords: Bacteria

description: Agrobacterium radiobacter CCUG 32544 is a bacterium that was isolated from Phanerochaete chrysosporium.

NCBI tax id

  • NCBI tax id: 358
  • Matching level: species

doi: 10.13145/bacdive146960.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Agrobacterium
  • species: Agrobacterium radiobacter
  • full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus radiobacter
    20215Rhizobium radiobacter
    20215Beijerinckia fluminensis

@ref: 51058

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhizobiaceae

genus: Agrobacterium

species: Agrobacterium radiobacter

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51058C16:07.916
    51058C14:0 3OH/C16:1 ISO I5.615.485
    51058C16:0 3OH3.217.52
    51058C16:1 ω7c2.315.819
    51058C18:1 ω7c /12t/9t77.317.824
    51058C19:0 CYCLO ω8c2.718.9
    51058Unidentified119.378
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
51058----++-++++++++--+--+

Isolation, sampling and environmental information

isolation

  • @ref: 51058
  • sample type: Phanerochaete chrysosporium

isolation source categories

  • Cat1: #Host
  • Cat2: #Fungi

External links

@ref: 51058

culture collection no.: CCUG 32544

straininfo link

  • @ref: 101744
  • straininfo: 51624

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
51058Curators of the CCUGhttps://www.ccug.se/strain?id=32544Culture Collection University of Gothenburg (CCUG) (CCUG 32544)
68369Automatically annotated from API 20NE
101744Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51624.1