Strain identifier
version 8.1 (current version)
General
@ref: 51054
BacDive-ID: 146956
keywords: Bacteria
description: Agrobacterium radiobacter CCUG 32540 is a bacterium that was isolated from Phanerochaete chrysosporium.
NCBI tax id
- NCBI tax id: 358
- Matching level: species
doi: 10.13145/bacdive146956.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium radiobacter
- full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus radiobacter 20215 Rhizobium radiobacter 20215 Beijerinckia fluminensis
@ref: 51054
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium radiobacter
type strain: no
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 51054 C16:0 8.9 16 51054 C18:0 4.1 18 51054 C14:0 3OH/C16:1 ISO I 7.1 15.485 51054 C16:1 ω7c 3.6 15.819 51054 C18:1 ω7c /12t/9t 72.8 17.824 51054 Unidentified 3.6 18.083 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51054 | - | - | - | - | + | - | - | + | + | + | + | + | + | + | - | - | - | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 51054
- sample type: Phanerochaete chrysosporium
isolation source categories
- Cat1: #Host
- Cat2: #Fungi
External links
@ref: 51054
culture collection no.: CCUG 32540
straininfo link
- @ref: 101741
- straininfo: 51623
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
51054 | Curators of the CCUG | https://www.ccug.se/strain?id=32540 | Culture Collection University of Gothenburg (CCUG) (CCUG 32540) | |
68369 | Automatically annotated from API 20NE | |||
101741 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51623.1 |