Strain identifier

BacDive ID: 14656

Type strain: No

Species: Mammaliicoccus sciuri

Strain Designation: DD 791, BM 12488, DD791

Strain history: CIP <- 1999, N. El Solh, Inst. Pasteur, Paris, France: strain BM 12488 <- W. Kloos: strain DD791

NCBI tax ID(s): 1296 (species)

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General

@ref: 5931

BacDive-ID: 14656

DSM-Number: 15613

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Mammaliicoccus sciuri DD 791 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from sliced veal leg.

NCBI tax id

  • NCBI tax id: 1296
  • Matching level: species

strain history

@refhistory
5931<- ATCC <- W. E. Kloos; DD791
122523CIP <- 1999, N. El Solh, Inst. Pasteur, Paris, France: strain BM 12488 <- W. Kloos: strain DD791

doi: 10.13145/bacdive14656.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Mammaliicoccus
  • species: Mammaliicoccus sciuri
  • full scientific name: Mammaliicoccus sciuri (Kloos et al. 1976) Madhaiyan et al. 2020

  • synonyms

    @refsynonym
    20215Staphylococcus sciuri
    20215Staphylococcus sciuri subsp. rodentium
    20215Staphylococcus sciuri subsp. carnaticus

@ref: 5931

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Mammaliicoccus

species: Mammaliicoccus sciuri

full scientific name: Mammaliicoccus sciuri (Kloos et al. 1976) Madhaiyan et al. 2020

strain designation: DD 791, BM 12488, DD791

type strain: no

Morphology

cell morphology

  • @ref: 122523
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysishemolysis ability
5931gamma
1225231

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5931COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5931TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42160MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122523CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
122523CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
122523CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
5931positivegrowth37mesophilic
42160positivegrowth37mesophilic
54828positivegrowth37mesophilic
122523positivegrowth22-45
122523nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
54828aerobe
122523facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
122523606565hippurate+hydrolysis
12252317632nitrate+reduction
12252316301nitrite-reduction
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin+hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose-fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is resistant: yes
  • resistance conc.: 1.8 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837515688acetoinno
12252335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837515688acetoin-
12252315688acetoin-

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase+3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5
122523oxidase+
122523beta-galactosidase-3.2.1.23
122523alcohol dehydrogenase-1.1.1.1
122523gelatinase+
122523amylase-
122523DNase+/-
122523caseinase+3.4.21.50
122523catalase+1.11.1.6
122523coagulase-
122523tween esterase-
122523gamma-glutamyltransferase-2.3.2.2
122523lecithinase-
122523lipase-
122523lysine decarboxylase-4.1.1.18
122523ornithine decarboxylase-4.1.1.17
122523phenylalanine ammonia-lyase-4.3.1.24
122523protease+
122523urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122523-+++-+----++---+++--

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
5931---+++++--+---+---+-++----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122523+++-+--+-++----+++++-++---+-+--+-++++----+-------+----+-+--++------------+-++++-------+--++---+----

Isolation, sampling and environmental information

isolation

@refsample type
5931sliced veal leg
54828Sliced veal leg
122523Animal, Calf

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Limb#Leg

taxonmaps

  • @ref: 69479
  • File name: preview.99_116.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_96;98_105;99_116&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: AF508104
  • Sequence Identity:
  • Total samples: 7505
  • soil counts: 269
  • aquatic counts: 251
  • animal counts: 6869
  • plant counts: 116

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
5931yes, in single casesyes1Risk group (German classification)
1225231Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus sciuri subsp. carnaticus strain ATCC 700058 16S ribosomal RNA gene, partial sequenceAY688095465ena147468
5931Staphylococcus sciuri isolate S7 16S ribosomal RNA gene, partial sequenceAF5081041322ena1296

GC content

  • @ref: 5931
  • GC-content: 36.3

External links

@ref: 5931

culture collection no.: CCM 4835, DSM 15613, ATCC 700058, CCUG 39509 A, CIP 105826

straininfo link

  • @ref: 83782
  • straininfo: 43749

literature

  • topic: Phylogeny
  • Pubmed-ID: 9103615
  • title: Ribotype delineation and description of Staphylococcus sciuri subspecies and their potential as reservoirs of methicillin resistance and staphylolytic enzyme genes.
  • authors: Kloos WE, Ballard DN, Webster JA, Hubner RJ, Tomasz A, Couto I, Sloan GL, Dehart HP, Fiedler F, Schubert K, de Lencastre H, Sanches IS, Heath HE, Leblanc PA, Ljungh A
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-2-313
  • year: 1997
  • mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, Enzymes/genetics, Genes, Bacterial, Methicillin Resistance/genetics, Nucleic Acid Hybridization, Phenotype, Species Specificity, Staphylococcus/*classification/drug effects/genetics
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5931Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15613)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15613
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42160Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17888
54828Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 39509 A)https://www.ccug.se/strain?id=39509
68375Automatically annotated from API ID32STA
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83782Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43749.1StrainInfo: A central database for resolving microbial strain identifiers
122523Curators of the CIPCollection of Institut Pasteur (CIP 105826)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105826