Strain identifier

BacDive ID: 14635

Type strain: No

Species: Staphylococcus carnosus

Strain Designation: SK 09

Strain history: CIP <- 1998, C. Hertel, Univ. Hohenheim, Stuttgart, Germany: strain SK 09 <- Tanasupawat

NCBI tax ID(s): 1281 (species)

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General

@ref: 4441

BacDive-ID: 14635

DSM-Number: 11677

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive

description: Staphylococcus carnosus SK 09 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from fermented fish sauce .

NCBI tax id

  • NCBI tax id: 1281
  • Matching level: species

strain history

@refhistory
4441<- A.J. Probst <- ? <- JCM <- Tanasupawat, SK 09
67770S. Tanasupawat SK-09.
117192CIP <- 1998, C. Hertel, Univ. Hohenheim, Stuttgart, Germany: strain SK 09 <- Tanasupawat

doi: 10.13145/bacdive14635.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus carnosus
  • full scientific name: Staphylococcus carnosus Schleifer and Fischer 1982

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus carnosus subsp. utilis

@ref: 4441

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus carnosus

full scientific name: Staphylococcus carnosus Schleifer and Fischer 1982

strain designation: SK 09

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
117192positivecoccus-shapedno

colony morphology

  • @ref: 117192
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4441TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
35860MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117192CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
4441positivegrowth37mesophilic
35860positivegrowth30mesophilic
67770positivegrowth30mesophilic
117192positivegrowth22-41
117192nogrowth10psychrophilic
117192nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117192
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.27

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
117192hippurate-hydrolysis606565
117192nitrate-reduction17632
117192nitrite-reduction16301

metabolite production

  • @ref: 117192
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 117192
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
117192oxidase-
117192beta-galactosidase-3.2.1.23
117192alcohol dehydrogenase+1.1.1.1
117192gelatinase-
117192amylase-
117192DNase+
117192caseinase-3.4.21.50
117192catalase+1.11.1.6
117192coagulase-
117192tween esterase-
117192gamma-glutamyltransferase-2.3.2.2
117192lecithinase-
117192lipase-
117192lysine decarboxylase-4.1.1.18
117192ornithine decarboxylase-4.1.1.17
117192phenylalanine ammonia-lyase-4.3.1.24
117192protease-
117192urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117192--++------++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117192+/----------++---------+/----------+-----------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
117192++++---------------------------+---------------------+------+-+------------+----------+------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
4441fermented fish sauce (Pla-chom)ThailandTHAAsia
67770Pla-chom (fermented small fish)
117192Food, Fermenting fish and shrimp sauces1991

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Host#Fishes
#Engineered#Food production#Fermented

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
44411Risk group (German classification)
1171921Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Staphylococcus carnosus subsp. utilis strain DSM 11677 16S ribosomal RNA gene, partial sequence
  • accession: AY688043
  • length: 464
  • database: ena
  • NCBI tax ID: 147449

Genome sequences

  • @ref: 66792
  • description: Staphylococcus carnosus strain FDAARGOS_1147
  • accession: 1281.25
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1281

GC content

  • @ref: 67770
  • GC-content: 34.8
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno80no
motileno88.448no
gram-positiveyes90.768no
anaerobicno99.035no
aerobicyes90.713no
halophileyes91.015no
spore-formingno90.556no
thermophileno99.865no
glucose-utilyes87.157no
flagellatedno87.58no
glucose-fermentyes79.046no

External links

@ref: 4441

culture collection no.: DSM 11677, JCM 6065, CIP 105759

straininfo link

  • @ref: 83763
  • straininfo: 49154

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4441Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11677)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11677
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35860Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17814
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49154.1StrainInfo: A central database for resolving microbial strain identifiers
117192Curators of the CIPCollection of Institut Pasteur (CIP 105759)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105759