Strain identifier

BacDive ID: 146342

Type strain: No

Species: Weissella confusa

NCBI tax ID(s): 1583 (species)

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General

@ref: 50342

BacDive-ID: 146342

keywords: genome sequence, Bacteria

description: Weissella confusa CCUG 30969 is a bacterium that was isolated from Human drain,13-yr-old girl.

NCBI tax id

  • NCBI tax id: 1583
  • Matching level: species

doi: 10.13145/bacdive146342.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Weissella
  • species: Weissella confusa
  • full scientific name: Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994

  • synonyms

    @refsynonym
    20215Lactobacillus coprophilus subsp. confusus
    20215Lactobacillus confusus
    20215Lactobacillus confusa

@ref: 50342

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Leuconostocaceae

genus: Weissella

species: Weissella confusa

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.054
69480100positive

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.996
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose-fermentation
6837965327D-xylose+fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose-fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    50342C14:09.214
    50342C16:038.416
    50342C16:1 ω7c9.115.819
    50342C18:1 ω7c /12t/9t25.517.824
    50342C18:2 ω6,9c/C18:0 ANTE17.917.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
50342-+-+-+--+---+-+-+-+-+

Isolation, sampling and environmental information

isolation

  • @ref: 50342
  • sample type: Human drain,13-yr-old girl
  • sampling date: 1993-01-08
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body Product#Fluids
#Infection#Patient
#Host#Human#Female

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Weissella confusa CCUG 30969GCA_004766185contigncbi1583
66792Weissella confusa CCUG 30969GCA_016466115contigncbi1583
66792Weissella confusa strain CCUG 309691583.277wgspatric1583
66792Weissella confusa strain CCUG 309691583.161wgspatric1583
66792Weissella confusa CCUG 309692849984077draftimg1583

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno97.863no
gram-positiveyes95.609no
anaerobicno91.374no
aerobicno95.27no
halophileyes92.638no
spore-formingno97.137no
thermophileno99.792no
glucose-utilyes91.732no
flagellatedno98.623no
glucose-fermentyes88.885no

External links

@ref: 50342

culture collection no.: CCUG 30969

straininfo link

  • @ref: 101230
  • straininfo: 8035

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
50342Curators of the CCUGhttps://www.ccug.se/strain?id=30969Culture Collection University of Gothenburg (CCUG) (CCUG 30969)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
101230Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID8035.1