Strain identifier
version 9.3 (current version)
General
@ref: 50336
BacDive-ID: 146336
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Weissella confusa CCUG 30943 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from Human gall,T-drain,11-yr-old girl.
NCBI tax id
- NCBI tax id: 1583
- Matching level: species
doi: 10.13145/bacdive146336.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Weissella
- species: Weissella confusa
- full scientific name: Weissella confusa corrig. (Holzapfel and Kandler 1969) Collins et al. 1994
synonyms
@ref synonym 20215 Lactobacillus confusus 20215 Lactobacillus confusa 20215 Lactobacillus coprophilus subsp. confusus
@ref: 50336
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Leuconostocaceae
genus: Weissella
species: Weissella confusa
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 97.6 | |
| 125438 | 92.5 | no | |
| 125438 | positive | 96.366 |
Culture and growth conditions
culture temp
- @ref: 50336
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 50336 | microaerophile | |
| 125439 | facultative anaerobe | 98.9 |
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68381 | 16199 | urea | - | hydrolysis |
| 68381 | 16443 | D-tagatose | - | builds acid from |
| 68381 | 320055 | methyl beta-D-glucopyranoside | + | builds acid from |
| 68381 | 6731 | melezitose | - | builds acid from |
| 68381 | 28053 | melibiose | - | builds acid from |
| 68381 | 17306 | maltose | + | builds acid from |
| 68381 | 28087 | glycogen | - | builds acid from |
| 68381 | 27941 | pullulan | - | builds acid from |
| 68381 | 606565 | hippurate | - | hydrolysis |
| 68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
| 68381 | 18333 | D-arabitol | - | builds acid from |
| 68381 | 30849 | L-arabinose | - | builds acid from |
| 68381 | 17992 | sucrose | + | builds acid from |
| 68381 | 16634 | raffinose | - | builds acid from |
| 68381 | 27082 | trehalose | - | builds acid from |
| 68381 | 17716 | lactose | - | builds acid from |
| 68381 | 16899 | D-mannitol | - | builds acid from |
| 68381 | 30911 | sorbitol | - | builds acid from |
| 68381 | 29016 | arginine | - | hydrolysis |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | |
| 68371 | 24265 | gluconate | - | builds acid from |
| 68371 | 18403 | L-arabitol | - | builds acid from |
| 68371 | 18287 | L-fucose | - | builds acid from |
| 68371 | 18333 | D-arabitol | - | builds acid from |
| 68371 | 28847 | D-fucose | - | builds acid from |
| 68371 | 16443 | D-tagatose | - | builds acid from |
| 68371 | 62318 | D-lyxose | - | builds acid from |
| 68371 | 32528 | turanose | - | builds acid from |
| 68371 | 28066 | gentiobiose | - | builds acid from |
| 68371 | 17151 | xylitol | - | builds acid from |
| 68371 | 28087 | glycogen | - | builds acid from |
| 68371 | 28017 | starch | - | builds acid from |
| 68371 | 6731 | melezitose | - | builds acid from |
| 68371 | 15443 | inulin | - | builds acid from |
| 68371 | 27082 | trehalose | - | builds acid from |
| 68371 | 17992 | sucrose | + | builds acid from |
| 68371 | 28053 | melibiose | - | builds acid from |
| 68371 | 17716 | lactose | - | builds acid from |
| 68371 | 17057 | cellobiose | + | builds acid from |
| 68371 | 17814 | salicin | - | builds acid from |
| 68371 | 4853 | esculin | + | builds acid from |
| 68371 | 27613 | amygdalin | - | builds acid from |
| 68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
| 68371 | 17924 | D-sorbitol | - | builds acid from |
| 68371 | 16899 | D-mannitol | - | builds acid from |
| 68371 | 17268 | myo-inositol | - | builds acid from |
| 68371 | 62345 | L-rhamnose | - | builds acid from |
| 68371 | 17266 | L-sorbose | - | builds acid from |
| 68371 | 16024 | D-mannose | + | builds acid from |
| 68371 | 15824 | D-fructose | + | builds acid from |
| 68371 | 17634 | D-glucose | + | builds acid from |
| 68371 | 12936 | D-galactose | + | builds acid from |
| 68371 | 16988 | D-ribose | - | builds acid from |
| 68371 | 30849 | L-arabinose | - | builds acid from |
| 68371 | 17754 | glycerol | - | builds acid from |
| 68371 | 16634 | raffinose | - | builds acid from |
| 68371 | 17306 | maltose | + | builds acid from |
| 68371 | 18305 | arbutin | - | builds acid from |
| 68371 | 59640 | N-acetylglucosamine | + | builds acid from |
| 68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
| 68371 | 16813 | galactitol | - | builds acid from |
| 68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
| 68371 | 15963 | ribitol | - | builds acid from |
| 68371 | 65328 | L-xylose | - | builds acid from |
| 68371 | 65327 | D-xylose | - | builds acid from |
| 68371 | 17108 | D-arabinose | - | builds acid from |
| 68371 | 17113 | erythritol | - | builds acid from |
| 68381 | 16988 | D-ribose | - | builds acid from |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68381 | urease | - | 3.5.1.5 |
| 68381 | beta-mannosidase | - | 3.2.1.25 |
| 68381 | glycyl tryptophan arylamidase | - | |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
| 68381 | alkaline phosphatase | - | 3.1.3.1 |
| 68381 | beta-glucuronidase | - | 3.2.1.31 |
| 68381 | alpha-galactosidase | - | 3.2.1.22 |
| 68381 | arginine dihydrolase | - | 3.5.3.6 |
| 68381 | beta-galactosidase | + | 3.2.1.23 |
| 68381 | beta-glucosidase | + | 3.2.1.21 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 50336 C14:0 8.8 14 50336 C16:0 23.3 16 50336 C18:0 12.1 18 50336 C16:1 ω7c 5 15.819 50336 C18:1 ω9c 24 17.769 50336 C18:2 ω6,9c/C18:0 ANTE 22.5 17.724 50336 C19:0 CYCLO ω9c 4.2 18.87 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 50CHac
| @ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50336 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API rID32STR
| @ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50336 | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 50336
- sample type: Human gall,T-drain,11-yr-old girl
- sampling date: 1992-12-28
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Child |
| #Host Body Product | #Fluids | |
| #Host Body-Site | #Urogenital tract | #Bladder |
| #Infection | #Patient | |
| #Host | #Human | #Female |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Weissella confusa CCUG 30943 | GCA_016466155 | contig | ncbi | 1583 |
| 66792 | Weissella confusa strain CCUG 30943 | 1583.278 | wgs | patric | 1583 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 96.366 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 86.639 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.352 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.482 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 90.272 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 89 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 97.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | facultative anaerobe | 98.9 |
External links
@ref: 50336
culture collection no.: CCUG 30943
straininfo link
- @ref: 101225
- straininfo: 11110
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 50336 | Curators of the CCUG | https://www.ccug.se/strain?id=30943 | Culture Collection University of Gothenburg (CCUG) (CCUG 30943) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68371 | Automatically annotated from API 50CH acid | |||
| 68381 | Automatically annotated from API rID32STR | |||
| 101225 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID11110.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |