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Strain identifier

BacDive ID: 145864

Type strain: No

Species: Odoribacter splanchnicus

NCBI tax ID(s): 28118 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 49762

BacDive-ID: 145864

keywords: Bacteria, anaerobe, mesophilic

description: Odoribacter splanchnicus CCUG 29830 is an anaerobe, mesophilic bacterium that was isolated from Human wound,20-yr-old woman.

NCBI tax id

  • NCBI tax id: 28118
  • Matching level: species

doi: 10.13145/bacdive145864.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Odoribacteraceae
  • genus: Odoribacter
  • species: Odoribacter splanchnicus
  • full scientific name: Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Bacteroides splanchnicus

@ref: 49762

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Marinifilaceae

genus: Odoribacter

species: Odoribacter splanchnicus

type strain: no

Culture and growth conditions

culture temp

  • @ref: 49762
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49762
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838027897tryptophan+energy source
6838017632nitrate-reduction
6838029985L-glutamate+degradation
6838016634raffinose-fermentation
6838016024D-mannose-fermentation
6838029016arginine-hydrolysis
6838016199urea-hydrolysis

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase+
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49762C14:02.114
    49762C15:01.915
    49762C16:02.816
    49762C18:00.618
    49762C13:1 at 12-131.412.931
    49762C15:0 ANTEISO17.314.711
    49762C15:0 ISO48.314.621
    49762C16:0 3OH7.817.52
    49762C16:0 iso0.615.626
    49762C16:1 ω7c0.715.819
    49762C17:0 iso0.516.629
    49762C17:0 iso 3OH7.118.161
    49762C17:1 ω9c ISO0.916.416
    49762C18:1 ω9c2.517.769
    49762C18:2 ω6,9c/C18:0 ANTE2.917.724
    49762Unidentified0.415.341
    49762unknown 13.5662.313.566
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
49762-+++-++--+--++-+-+-+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
49762--++-+---+--++-+++-++++++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 49762
  • sample type: Human wound,20-yr-old woman
  • sampling date: 1992-03-11
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body-Site#Other#Wound
#Infection#Patient

External links

@ref: 49762

culture collection no.: CCUG 29830

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49762Curators of the CCUGhttps://www.ccug.se/strain?id=29830Culture Collection University of Gothenburg (CCUG) (CCUG 29830)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym