Strain identifier

BacDive ID: 145864

Type strain: No

Species: Odoribacter splanchnicus

NCBI tax ID(s): 28118 (species)

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General

@ref: 49762

BacDive-ID: 145864

keywords: Bacteria, anaerobe, mesophilic

description: Odoribacter splanchnicus CCUG 29830 is an anaerobe, mesophilic bacterium that was isolated from Human wound,20-yr-old woman.

NCBI tax id

  • NCBI tax id: 28118
  • Matching level: species

doi: 10.13145/bacdive145864.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Odoribacteraceae
  • genus: Odoribacter
  • species: Odoribacter splanchnicus
  • full scientific name: Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides splanchnicus

@ref: 49762

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Marinifilaceae

genus: Odoribacter

species: Odoribacter splanchnicus

type strain: no

Culture and growth conditions

culture temp

  • @ref: 49762
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49762
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase+
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49762C14:02.114
    49762C15:01.915
    49762C16:02.816
    49762C18:00.618
    49762C13:1 at 12-131.412.931
    49762C15:0 ANTEISO17.314.711
    49762C15:0 ISO48.314.621
    49762C16:0 3OH7.817.52
    49762C16:0 iso0.615.626
    49762C16:1 ω7c0.715.819
    49762C17:0 iso0.516.629
    49762C17:0 iso 3OH7.118.161
    49762C17:1 ω9c ISO0.916.416
    49762C18:1 ω9c2.517.769
    49762C18:2 ω6,9c/C18:0 ANTE2.917.724
    49762Unidentified0.415.341
    49762unknown 13.5662.313.566
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
49762-+++-++--+--++-+-+-+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
49762--++-+---+--++-+++-++++++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 49762
  • sample type: Human wound,20-yr-old woman
  • sampling date: 1992-03-11
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body-Site#Other#Wound
#Infection#Patient

External links

@ref: 49762

culture collection no.: CCUG 29830

straininfo link

  • @ref: 100812
  • straininfo: 51884

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49762Curators of the CCUGhttps://www.ccug.se/strain?id=29830Culture Collection University of Gothenburg (CCUG) (CCUG 29830)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
100812Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51884.1