Strain identifier

BacDive ID: 14586

Type strain: No

Species: Staphylococcus warneri

Strain Designation: 0258

Strain history: IAM 1296 <-- ATCC 155 <-- Walter Reed Army Med. Center; AMC 263 <-- AMNH <-- Parke, Davis & Co.; 0258 <-- S. Seeley.

NCBI tax ID(s): 1292 (species)

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General

@ref: 8442

BacDive-ID: 14586

DSM-Number: 20036

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Staphylococcus warneri 0258 is a mesophilic human pathogen that was isolated from skin lesion.

NCBI tax id

  • NCBI tax id: 1292
  • Matching level: species

strain history

@refhistory
8442<- ATCC <- AMC 263 <- AMNH <- Parke, Davis and Co., 0258 (Staphylococcus pyogenes albus) <-S. Seely
67770IAM 1296 <-- ATCC 155 <-- Walter Reed Army Med. Center; AMC 263 <-- AMNH <-- Parke, Davis & Co.; 0258 <-- S. Seeley.

doi: 10.13145/bacdive14586.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus warneri
  • full scientific name: Staphylococcus warneri Kloos and Schleifer 1975 (Approved Lists 1980)

@ref: 8442

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus warneri

full scientific name: Staphylococcus warneri Kloos and Schleifer 1975

strain designation: 0258

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8442
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8442positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

murein

  • @ref: 8442
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is resistant: yes
  • resistance conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
8442catalase+1.11.1.6
68375beta-glucuronidase+3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8442++--++-++++---+++/----++++/--+

Isolation, sampling and environmental information

isolation

@refsample type
8442skin lesion
67770Skin lesion

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Other#Wound
#Host Body-Site#Organ#Skin, Nail, Hair

Safety information

risk assessment

  • @ref: 8442
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Staphylococcus warneri strain DSM 20036 16S ribosomal RNA gene, partial sequence
  • accession: AY688105
  • length: 464
  • database: ena
  • NCBI tax ID: 1292

GC content

  • @ref: 8442
  • GC-content: 35.0

External links

@ref: 8442

culture collection no.: DSM 20036, ATCC 155, JCM 20142, IAM 1296, IFO 3762, NBRC 3762, NCTC 5955

straininfo link

  • @ref: 83716
  • straininfo: 92866

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8442Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20036)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20036
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68375Automatically annotated from API ID32STA
83716Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92866.1StrainInfo: A central database for resolving microbial strain identifiers