Strain identifier

BacDive ID: 145678

Type strain: No

Species: Escherichia coli

Strain history: CIP <- 1999, D. Fréchon, Sanofi, Marnes la Coquette, France <- 1997, ATCC <- CDC: strain EDL 933

NCBI tax ID(s): 562 (species)

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General

@ref: 49545

BacDive-ID: 145678

keywords: genome sequence, Bacteria, facultative anaerobe, motile

description: Escherichia coli CCUG 29197 B is a facultative anaerobe, motile bacterium that was isolated from Raw hamburger meat.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118694
  • history: CIP <- 1999, D. Fréchon, Sanofi, Marnes la Coquette, France <- 1997, ATCC <- CDC: strain EDL 933

doi: 10.13145/bacdive145678.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 49545

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.254
6948099.976negative
118694yesnegativerod-shaped

colony morphology

  • @ref: 118694

Culture and growth conditions

culture medium

@refnamegrowthlink
118694CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
118694CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
118694positivegrowth30-41
118694nogrowth5psychrophilic
118694nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118694
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480no99.587
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11869429864mannitol+fermentation
11869416947citrate-carbon source
1186944853esculin-hydrolysis
11869417234glucose+fermentation
11869417716lactose+fermentation
11869417632nitrate+reduction
11869416301nitrite+reduction
11869415792malonate-assimilation
118694132112sodium thiosulfate-builds gas from
11869417234glucose+degradation

antibiotic resistance

  • @ref: 118694
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11869435581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
11869415688acetoin-
11869417234glucose+

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
118694oxidase-
118694beta-galactosidase+3.2.1.23
118694alcohol dehydrogenase-1.1.1.1
118694gelatinase-
118694catalase+1.11.1.6
118694lysine decarboxylase+4.1.1.18
118694ornithine decarboxylase+4.1.1.17
118694phenylalanine ammonia-lyase-4.3.1.24
118694tryptophan deaminase-
118694urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118694-+---+----++++------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUINOSorRHASACMELNO2N2
118694-------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118694+++++++++++++++--+-+++-++----+-+-+---------+++-+++----+++--++----++-++-----+---++-+---+--++++++-+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
49545Raw hamburger meatUnited KingdomGBREurope
118694Food, Raw hamburger meatUnited States of AmericaUSANorth AmericaOregon1982

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Meat

Safety information

risk assessment

  • @ref: 118694
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Escherichia coli O157:H7 str. EDL933
  • accession: 155864.295
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 155864

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.074no
gram-positiveno97.853no
anaerobicno95.045no
aerobicyes83.511no
halophileno90.705no
spore-formingno93.707no
thermophileno99.161no
glucose-utilyes93.98no
flagellatedno58.785no
glucose-fermentyes93.053no

External links

@ref: 49545

culture collection no.: CCUG 29197 B, ATCC 43895, CIP 106327, CCRC 14824, CECT 4783, CCTM La 2949, WDCM 00188, CDC EDL 933

straininfo link

  • @ref: 100656
  • straininfo: 7901

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49545Curators of the CCUGhttps://www.ccug.se/strain?id=29197Culture Collection University of Gothenburg (CCUG) (CCUG 29197 B)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
100656Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7901.1
118694Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106327Collection of Institut Pasteur (CIP 106327)