Strain identifier

BacDive ID: 14565

Type strain: No

Species: Staphylococcus lugdunensis

Strain Designation: LRA 2600 579, LRA 2600579, LRA 260 05 79

Strain history: CIP <- 1992, R. Mercier, bioMérieux, La Balme-les-Grottes, France: strain LRA 260 05 79 <- 1979, API System UK

NCBI tax ID(s): 28035 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 2760

BacDive-ID: 14565

DSM-Number: 6670

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Staphylococcus lugdunensis LRA 2600 579 is an aerobe, mesophilic, Gram-positive bacterium of the family Staphylococcaceae.

NCBI tax id

  • NCBI tax id: 28035
  • Matching level: species

strain history

@refhistory
2760<- API, LRA 2600 579
120669CIP <- 1992, R. Mercier, bioMérieux, La Balme-les-Grottes, France: strain LRA 260 05 79 <- 1979, API System UK

doi: 10.13145/bacdive14565.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lugdunensis
  • full scientific name: Staphylococcus lugdunensis Freney et al. 1988

@ref: 2760

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus lugdunensis

full scientific name: Staphylococcus lugdunensis Freney et al. 1988

strain designation: LRA 2600 579, LRA 2600579, LRA 260 05 79

type strain: no

Morphology

cell morphology

  • @ref: 120669
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 120669
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2760COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
2760TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
42279MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120669CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
120669CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
2760positivegrowth37mesophilic
42279positivegrowth37mesophilic
52775positivegrowth37mesophilic
120669positivegrowth37-45
120669nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 52775
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12066917632nitrate+reduction
12066916301nitrite-reduction
12066935020tributyrin-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine+degradation
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 120669
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120669
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 120669
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375L-arginine arylamidase-
68375ornithine decarboxylase+4.1.1.17
68375arginine dihydrolase-3.5.3.6
120669oxidase-
120669beta-galactosidase-3.2.1.23
120669alcohol dehydrogenase-1.1.1.1
120669gelatinase-
120669DNase-
120669catalase+1.11.1.6
120669coagulase-
120669lecithinase-
120669lysine decarboxylase-4.1.1.18
120669ornithine decarboxylase+4.1.1.17
120669urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
2760--+-++++++----+++-+++/-++---
52775--+-++++++---++---+-++---
2760+-++/-++++++---+++/----++/-+++/---

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
27602Risk group (German classification)
1206691Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Staphylococcus lugdunensis strain DSM 6670 16S ribosomal RNA gene, partial sequence
  • accession: AY688076
  • length: 464
  • database: ena
  • NCBI tax ID: 28035

External links

@ref: 2760

culture collection no.: DSM 6670, ATCC 49576, CCUG 35505, CIP 103584

straininfo link

  • @ref: 83695
  • straininfo: 46393

literature

  • topic: Pathogenicity
  • Pubmed-ID: 10467667
  • title: False-positive beta-lactamase results with Staphylococcus lugdunensis in the Vitek AutoMicrobic system.
  • authors: Zbinden R, von Graevenitz A, Rossi J, Kumin E, Berger-Bachi B, Hachler H, Nadal D
  • journal: Zentralbl Bakteriol
  • DOI: 10.1016/s0934-8840(99)80076-0
  • year: 1999
  • mesh: Diffusion, False Positive Reactions, Humans, Microbial Sensitivity Tests, Penicillin Resistance, Quality Control, Staphylococcus/drug effects/*enzymology, beta-Lactamases/*metabolism
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2760Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6670)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6670
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
42279Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15397
52775Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35505)https://www.ccug.se/strain?id=35505
68375Automatically annotated from API ID32STA
83695Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46393.1StrainInfo: A central database for resolving microbial strain identifiers
120669Curators of the CIPCollection of Institut Pasteur (CIP 103584)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103584