Strain identifier
BacDive ID: 14563
Type strain: 
Species: Staphylococcus lugdunensis
Strain Designation: N850412
Strain history: <- J. Fleurette <- Centre National des Staphylocoques, Lyon N850412
NCBI tax ID(s): 28035 (species)
version 8.1 (current version)
General
@ref: 1828
BacDive-ID: 14563
DSM-Number: 4805
keywords: 16S sequence, Bacteria, mesophilic
description: Staphylococcus lugdunensis N850412 is a mesophilic bacterium that was isolated from blood.
NCBI tax id
- NCBI tax id: 28035
- Matching level: species
strain history
- @ref: 1828
- history: <- J. Fleurette <- Centre National des Staphylocoques, Lyon N850412
doi: 10.13145/bacdive14563.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus lugdunensis
- full scientific name: Staphylococcus lugdunensis Freney et al. 1988
@ref: 1828
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus lugdunensis
full scientific name: Staphylococcus lugdunensis Freney et al. 1988
strain designation: N850412
type strain: no
Morphology
colony morphology
- @ref: 1828
- type of hemolysis: beta
- hemolysis ability: 1
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1828 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 1828 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
- @ref: 1828
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
murein
- @ref: 1828
- murein short key: A11.02
- type: A3alpha L-Lys-Gly5-6
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68375 | 16199 | urea | + | hydrolysis |
| 68375 | 29016 | arginine | - | hydrolysis |
| 68375 | 18257 | ornithine | + | degradation |
| 68375 | 4853 | esculin | + | hydrolysis |
| 68375 | 17634 | D-glucose | + | fermentation |
| 68375 | 15824 | D-fructose | + | fermentation |
| 68375 | 16024 | D-mannose | + | fermentation |
| 68375 | 17306 | maltose | + | fermentation |
| 68375 | 27082 | trehalose | + | fermentation |
| 68375 | 16899 | D-mannitol | - | fermentation |
| 68375 | 16634 | raffinose | - | fermentation |
| 68375 | 16988 | D-ribose | - | fermentation |
| 68375 | 17057 | cellobiose | - | fermentation |
| 68375 | 17632 | nitrate | + | reduction |
| 68375 | 17992 | sucrose | + | fermentation |
| 68375 | 59640 | N-acetylglucosamine | + | fermentation |
| 68375 | 22599 | arabinose | - | fermentation |
antibiotic resistance
- @ref: 68375
- ChEBI: 28368
- metabolite: novobiocin
- is antibiotic: yes
- is resistant: yes
- resistance conc.: 1.8 µg
metabolite production
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 1828 | catalase | + | 1.11.1.6 |
| 1828 | cytochrome-c oxidase | - | 1.9.3.1 |
| 68375 | beta-glucuronidase | - | 3.2.1.31 |
| 68375 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
| 68375 | L-arginine arylamidase | - | |
| 68375 | beta-galactosidase | - | 3.2.1.23 |
| 68375 | beta-glucosidase | + | 3.2.1.21 |
| 68375 | ornithine decarboxylase | + | 4.1.1.17 |
| 68375 | arginine dihydrolase | - | 3.5.3.6 |
| 68375 | urease | + | 3.5.1.5 |
API ID32STA
| @ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1828 | + | - | + | + | + | + | + | + | +/- | + | - | - | - | - | + | + | - | - | +/- | + | + | + | + | +/- | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 1828
- sample type: blood
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Blood |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 1828
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Staphylococcus lugdunensis strain DSM 4805 16S ribosomal RNA gene, partial sequence
- accession: AY688075
- length: 464
- database: ena
- NCBI tax ID: 28035
GC content
- @ref: 1828
- GC-content: 32.0
External links
@ref: 1828
culture collection no.: DSM 4805
straininfo link
- @ref: 83693
- straininfo: 47868
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1828 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4805) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4805 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 68375 | Automatically annotated from API ID32STA | |||||
| 83693 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47868.1 | StrainInfo: A central database for resolving microbial strain identifiers |