Strain identifier

BacDive ID: 14555

Type strain: Yes

Species: Staphylococcus intermedius

Strain Designation: H11

Culture col. no.: DSM 20373, ATCC 29663, CCM 5739, NCTC 11048

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General

@ref: 8627

BacDive-ID: 14555

DSM-Number: 20373

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Staphylococcus intermedius H11 is a mesophilic bacterium that was isolated from pigeon nares.

strain history: <- K.H. Schleifer <- V. Hajek, H11

doi: 10.13145/bacdive14555.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus intermedius
  • full scientific name: Staphylococcus intermedius Hájek 1976 (Approved Lists 1980)

@ref: 8627

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus intermedius

full scientific name: Staphylococcus intermedius Hájek 1976

strain designation: H11

type strain: yes

Morphology

colony morphology

  • @ref: 8627
  • type of hemolysis: beta

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8627COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
8627TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
37296MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
8627positivegrowth37mesophilic
37296positivegrowth37mesophilic

Physiology and metabolism

murein

  • @ref: 8627
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

enzymes

@refvalueactivityec
8627catalase+1.11.1.6
8627cytochrome-c oxidase-1.9.3.1

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8627+---+++++++-+-+-+-++/--++---
8627+---+++++++-+-+-+-++-++---
8627+---+++++++-+-+-+-+++/-+++--
8627+---+++++++-+-+++-+++++---
8627+---+++++++-+-+-+-++/--++---

Isolation, sampling and environmental information

isolation

  • @ref: 8627
  • sample type: pigeon nares

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body-Site#Organ#Nose

Safety information

risk assessment

  • @ref: 8627
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus intermedius strain DSM 20373 16S ribosomal RNA gene, partial sequenceAY688070464ena1141106
20218Staphylococcus intermedius strain NCTC11048 16S ribosomal RNA gene, partial sequenceEU157207366ena1141106
20218S.intermedius gene for 16S ribosomal RNAZ26897771ena1141106
8627Staphylococcus intermedius gene for 16S rRNA, partial sequence, strain: ATCC 29663 (= MAFF 911388)D833691476ena1141106

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus intermedius NCTC 11048GCA_900458545contigncbi1141106
66792Staphylococcus intermedius NCTC 11048GCA_002902385scaffoldncbi1141106
66792Staphylococcus intermedius NCTC 11048GCA_000308095contigncbi1141106
66792Staphylococcus intermedius 14S03297-1GCA_002374195contigncbi1285
66792Staphylococcus intermedius 14S03299-1GCA_002374205contigncbi1285
66792Staphylococcus intermedius 14S02204-1GCA_002369755contigncbi1285
66792Staphylococcus intermedius 14S03307-1GCA_002374235contigncbi1285
66792Staphylococcus intermedius 14S03302-1GCA_002374215contigncbi1285
66792Staphylococcus intermedius NCTC 110481141106.7wgspatric1141106
66792Staphylococcus intermedius NCTC 110481141106.9wgspatric1141106
66792Staphylococcus intermedius NCTC 11048 strain NCTC110481141106.10wgspatric1141106
66792Staphylococcus intermedius strain 14S02204-11285.6wgspatric1285
66792Staphylococcus intermedius strain 14S03297-11285.7wgspatric1285
66792Staphylococcus intermedius strain 14S03299-11285.8wgspatric1285
66792Staphylococcus intermedius strain 14S03302-11285.9wgspatric1285
66792Staphylococcus intermedius strain 14S03307-11285.10wgspatric1285
66792Staphylococcus intermedius strain NW11285.5wgspatric1285

GC content

  • @ref: 8627
  • GC-content: 36.0

External links

@ref: 8627

culture collection no.: DSM 20373, ATCC 29663, CCM 5739, NCTC 11048

straininfo link

@refpassport
20218http://www.straininfo.net/strains/30375
20218http://www.straininfo.net/strains/30371
20218http://www.straininfo.net/strains/30372
20218http://www.straininfo.net/strains/30377

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8627Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20373)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20373
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37296Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11224
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)