Strain identifier

BacDive ID: 145285

Type strain: No

Species: Schaalia odontolytica

NCBI tax ID(s): 1660 (species)

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General

@ref: 49088

BacDive-ID: 145285

keywords: 16S sequence, Bacteria, anaerobe

description: Schaalia odontolytica CCUG 28084 is an anaerobe bacterium that was isolated from Human clinical specimen,39-yr-old woman.

NCBI tax id

  • NCBI tax id: 1660
  • Matching level: species

doi: 10.13145/bacdive145285.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia odontolytica
  • full scientific name: Schaalia odontolytica (Batty 1958) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Actinomyces odontolyticus

@ref: 49088

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia odontolytica

type strain: no

Culture and growth conditions

culture temp

  • @ref: 49088
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
49088anaerobe
49088microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917716lactose+fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase-1.11.1.6
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49088C12:00.912
    49088C14:04.214
    49088C16:031.916
    49088C18:013.318
    49088C16:1 ω9c1.415.774
    49088C18:1 ω9c37.717.769
    49088C18:2 ω6,9c/C18:0 ANTE10.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
49088-+-+-++----------+---
49088-+-+-++---+-+---+++--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
49088--+------+--+----++--+--++------

Isolation, sampling and environmental information

isolation

  • @ref: 49088
  • sample type: Human clinical specimen,39-yr-old woman
  • sampling date: 1991-02-20
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Infection#Patient

Sequence information

16S sequences

  • @ref: 124043
  • description: Actinomyces odontolyticus 16S rRNA gene, strain CCUG 28084
  • accession: AJ234041
  • length: 1397
  • database: nuccore
  • NCBI tax ID: 1660

External links

@ref: 49088

culture collection no.: CCUG 28084

straininfo link

  • @ref: 100334
  • straininfo: 51333

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
49088Curators of the CCUGhttps://www.ccug.se/strain?id=28084Culture Collection University of Gothenburg (CCUG) (CCUG 28084)
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
100334Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51333.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy