Strain identifier
version 8.1 (current version)
General
@ref: 49078
BacDive-ID: 145275
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-positive
description: Mycobacterium phlei CCUG 28060 is a microaerophile, mesophilic, Gram-positive bacterium of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 1771
- Matching level: species
doi: 10.13145/bacdive145275.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium phlei
- full scientific name: Mycobacterium phlei Lehmann and Neumann 1899 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycolicibacterium phlei
@ref: 49078
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium phlei
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 49078
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 49078
- oxygen tolerance: microaerophile
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.809
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium phlei NCTC8156 | GCA_900453675 | contig | ncbi | 1771 |
| 66792 | Mycolicibacterium phlei strain NCTC8156 | 1771.14 | wgs | patric | 1771 |
| 66792 | Mycolicibacterium phlei NCTC 8156 | 2869293032 | draft | img | 1771 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 62 | no |
| motile | no | 92.881 | no |
| gram-positive | yes | 91.103 | no |
| anaerobic | no | 99.489 | yes |
| aerobic | yes | 85.102 | yes |
| halophile | no | 89.386 | no |
| spore-forming | no | 78.51 | no |
| thermophile | no | 99.067 | yes |
| glucose-util | yes | 87.156 | no |
| flagellated | no | 98.231 | no |
| glucose-ferment | no | 90.53 | no |
External links
@ref: 49078
culture collection no.: CCUG 28060, NCTC 8156
straininfo link
- @ref: 100325
- straininfo: 55611
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 49078 | Curators of the CCUG | https://www.ccug.se/strain?id=28060 | Culture Collection University of Gothenburg (CCUG) (CCUG 28060) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 100325 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID55611.1 |