Strain identifier
BacDive ID: 145060
Type strain: 
Species: Corynebacterium pseudotuberculosis
NCBI tax ID(s): 1719 (species)
version 8.1 (current version)
General
@ref: 48825
BacDive-ID: 145060
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Corynebacterium pseudotuberculosis CCUG 27541 is an aerobe, mesophilic bacterium that was isolated from Horse.
NCBI tax id
- NCBI tax id: 1719
- Matching level: species
doi: 10.13145/bacdive145060.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium pseudotuberculosis
- full scientific name: Corynebacterium pseudotuberculosis (Buchanan 1911) Eberson 1918 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus pseudotuberculosis
@ref: 48825
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium pseudotuberculosis
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.414 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture temp
- @ref: 48825
- growth: positive
- type: growth
- temperature: 30-37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 48825
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.995 |
| 69481 | no | 100 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 48825 C14:0 3.8 14 48825 C16:0 34.3 16 48825 C17:0 6.8 17 48825 C18:0 2.6 18 48825 C16:1 ω7c 31.6 15.819 48825 C18:1 ω9c 6.7 17.769 48825 C18:2 ω6,9c/C18:0 ANTE 14.7 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 48825
- sample type: Horse
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Equidae (Horse)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Corynebacterium pseudotuberculosis CCUG 27541 | GCA_000729725 | contig | ncbi | 1719 |
| 66792 | Corynebacterium pseudotuberculosis strain CCUG 27541 | 1719.80 | wgs | patric | 1719 |
| 66792 | Corynebacterium pseudotuberculosis CCUG 27541 | 2627853633 | draft | img | 1719 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.056 | no |
| gram-positive | yes | 94.742 | no |
| anaerobic | no | 99.338 | yes |
| aerobic | no | 77.63 | yes |
| halophile | yes | 71.152 | no |
| spore-forming | no | 93.644 | no |
| glucose-util | yes | 88.943 | no |
| flagellated | no | 97.846 | no |
| thermophile | no | 93.047 | yes |
| glucose-ferment | yes | 73.977 | no |
External links
@ref: 48825
culture collection no.: CCUG 27541, NCTC 4655
straininfo link
- @ref: 100152
- straininfo: 53238
literature
- topic: Genetics
- Pubmed-ID: 25189581
- title: Genome Sequences of Corynebacterium pseudotuberculosis Strains 48252 (Human, Pneumonia), CS_10 (Lab Strain), Ft_2193/67 (Goat, Pus), and CCUG 27541.
- authors: Havelsrud OE, Sorum H, Gaustad P
- journal: Genome Announc
- DOI: 10.1128/genomeA.00869-14
- year: 2014
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 48825 | Curators of the CCUG | https://www.ccug.se/strain?id=27541 | Culture Collection University of Gothenburg (CCUG) (CCUG 27541) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 100152 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID53238.1 |