Strain identifier

BacDive ID: 144674

Type strain: No

Species: Campylobacter hyointestinalis

NCBI tax ID(s): 198 (species)

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General

@ref: 48376

BacDive-ID: 144674

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Campylobacter hyointestinalis CCUG 26150 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Human feces,child.

NCBI tax id

  • NCBI tax id: 198
  • Matching level: species

doi: 10.13145/bacdive144674.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter hyointestinalis
  • full scientific name: Campylobacter hyointestinalis Gebhart et al. 1985

@ref: 48376

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter hyointestinalis

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.993

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
48376nogrowth30mesophilic
48376positivegrowth37mesophilic
48376nogrowth42thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48376
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69480no99.995
69481no100

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48376C12:00.812
    48376C13:00.213
    48376C14:019.814
    48376C15:00.915
    48376C16:026.416
    48376C18:00.118
    48376C13:0 ISO 2OH0.613.814
    48376C14:0 3OH/C16:1 ISO I7.815.485
    48376C16:1 ω5c0.415.908
    48376C16:1 ω7c23.715.819
    48376C17:1 ω6c0.316.862
    48376C18:1 ω7c /12t/9t17.717.824
    48376C18:1 ω9c0.117.769
    48376C18:2 ω6,9c/C18:0 ANTE0.817.724
    48376Unidentified0.115.175
    48376unknown 14.5030.314.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

  • @ref: 48376
  • sample type: Human feces,child
  • geographic location: Brussels
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Child
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260GCA_001643955completencbi1031746
66792Campylobacter hyointestinalis subsp. hyointestinalis LMG 92601031746.3completepatric1031746
66792Campylobacter hyointestinalis hyointestinalis LMG 92602687453147completeimg1031746

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes71.831no
gram-positiveno98.783no
anaerobicno79.963yes
aerobicno97.433yes
halophileno88.759no
spore-formingno94.312no
glucose-utilno91.465no
motileyes92.614no
thermophileno82.881no
glucose-fermentno86.086no

External links

@ref: 48376

culture collection no.: CCUG 26150, LMG 9260

straininfo link

  • @ref: 99823
  • straininfo: 1487

literature

  • topic: Genetics
  • Pubmed-ID: 27417840
  • title: Complete Genome Sequences of Campylobacter hyointestinalis subsp. hyointestinalis Strain LMG 9260 and C. hyointestinalis subsp. lawsonii Strain LMG 15993.
  • authors: Miller WG, Yee E, Chapman MH
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00665-16
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
48376Curators of the CCUGhttps://www.ccug.se/strain?id=26150Culture Collection University of Gothenburg (CCUG) (CCUG 26150)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
99823Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1487.1