Strain identifier

BacDive ID: 14465

Type strain: No

Species: Staphylococcus aureus

Strain Designation: Gaiger

Strain history: CIP <- 2016, NCTC <- 1924, S.H. Gaiger, Dis. Res. Ass., Glascow, Scotland, UK: strain Gaiger

NCBI tax ID(s): 1280 (species)

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General

@ref: 6029

BacDive-ID: 14465

DSM-Number: 15676

keywords: genome sequence, Bacteria, Gram-positive, coccus-shaped, human pathogen

description: Staphylococcus aureus Gaiger is a Gram-positive, coccus-shaped human pathogen that was isolated from ovine gangrenous mastitis.

NCBI tax id

  • NCBI tax id: 1280
  • Matching level: species

strain history

@refhistory
6029<- B. Holmes, NCTC <- S. H. Gaiger
116613CIP <- 2016, NCTC <- 1924, S.H. Gaiger, Dis. Res. Ass., Glascow, Scotland, UK: strain Gaiger

doi: 10.13145/bacdive14465.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus aureus
  • full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus aureus subsp. anaerobius

@ref: 6029

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus aureus

full scientific name: Staphylococcus aureus Rosenbach 1884

strain designation: Gaiger

type strain: no

Morphology

cell morphology

  • @ref: 116613
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6029COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6029TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
116613CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

  • @ref: 6029
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 97

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose+fermentation
6837522599arabinose-fermentation

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is resistant: yes
  • resistance conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
6029-+--+++++++---++--+-++++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
6029ovine gangrenous mastitis
116613Animal, Ovine, mammal gangrenous mastitisGlasgow, ScotlandUnited KingdomGBREurope1924

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Caprinae (Sheep/Goat)

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
6029yesyes2Risk group (German classification)
1166132Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus aureus NCTC1803GCA_900636695completencbi1280
66792Staphylococcus aureus strain NCTC18031280.19123completepatric1280

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno97no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes85.434no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no99.437no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no51.347no
69480spore-formingspore-formingAbility to form endo- or exosporesno74.036no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.24yes
69480flagellatedmotile2+Ability to perform flagellated movementno79.942no

External links

@ref: 6029

culture collection no.: DSM 15676, NCTC 1803, CIP 111145

straininfo link

  • @ref: 83604
  • straininfo: 91653

Reference

@idauthorscataloguedoi/urltitle
6029Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15676)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15676
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83604Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID91653.1StrainInfo: A central database for resolving microbial strain identifiers
116613Curators of the CIPCollection of Institut Pasteur (CIP 111145)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111145