Strain identifier
BacDive ID: 14459
Type strain: 
Species: Staphylococcus aureus
Strain history: <- ATCC <- W. A. Randall, 14
NCBI tax ID(s): 1280 (species)
version 9.3 (current version)
General
@ref: 4206
BacDive-ID: 14459
DSM-Number: 11110
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Staphylococcus aureus DSM 11110 is a mesophilic human pathogen that was isolated from finger.
NCBI tax id
- NCBI tax id: 1280
- Matching level: species
strain history
- @ref: 4206
- history: <- ATCC <- W. A. Randall, 14
doi: 10.13145/bacdive14459.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus aureus
- full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Staphylococcus aureus subsp. anaerobius
@ref: 4206
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus aureus
full scientific name: Staphylococcus aureus Rosenbach 1884
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4206 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| 4206 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
culture temp
- @ref: 4206
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 91.7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68375 | 22599 | arabinose | - | fermentation |
| 68375 | 59640 | N-acetylglucosamine | + | fermentation |
| 68375 | 17992 | sucrose | + | fermentation |
| 68375 | 17632 | nitrate | + | reduction |
| 68375 | 17057 | cellobiose | - | fermentation |
| 68375 | 16988 | D-ribose | - | fermentation |
| 68375 | 16899 | D-mannitol | + | fermentation |
| 68375 | 16634 | raffinose | - | fermentation |
| 68375 | 27082 | trehalose | + | fermentation |
| 68375 | 15824 | D-fructose | + | fermentation |
| 68375 | 17306 | maltose | + | fermentation |
| 68375 | 18257 | ornithine | - | degradation |
| 68375 | 17634 | D-glucose | + | fermentation |
| 68375 | 4853 | esculin | - | hydrolysis |
| 68375 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- production: yes
metabolite tests
- @ref: 68375
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68375 | beta-glucuronidase | - | 3.2.1.31 |
| 68375 | beta-glucosidase | - | 3.2.1.21 |
| 68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68375 | alkaline phosphatase | + | 3.1.3.1 |
| 68375 | L-arginine arylamidase | - | |
| 68375 | beta-galactosidase | - | 3.2.1.23 |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 |
| 68375 | urease | - | 3.5.1.5 |
API ID32STA
| @ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4206 | - | + | - | - | + | + | + | + | + | + | + | - | - | - | + | + | - | - | + | - | - | + | + | + | - | - |
| 4206 | - | - | - | - | + | + | +/- | + | - | + | + | - | - | - | + | + | - | - | + | - | - | + | + | +/- | - | - |
| 4206 | - | + | - | - | + | + | + | + | + | + | + | - | - | - | + | + | - | - | + | - | +/- | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 4206
- sample type: finger
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Limb
- Cat3: #Hand
Safety information
risk assessment
- @ref: 4206
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Staphylococcus aureus ATCC 6341 | GCA_019550815 | contig | ncbi | 1280 |
| 66792 | Staphylococcus aureus strain ATCC 6341 | 1280.34756 | wgs | patric | 1280 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 85.368 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.444 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 71.786 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 53.063 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.24 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 79.387 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 91.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 69.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 84 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 78.3 |
External links
@ref: 4206
culture collection no.: DSM 11110, ATCC 6341
straininfo link
- @ref: 83599
- straininfo: 34769
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4206 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11110) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11110 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 68375 | Automatically annotated from API ID32STA | |||
| 83599 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID34769.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |