General

@ref: 7138

BacDive-ID: 14436

DSM-Number: 17846

keywords: 16S sequence, Bacteria, mesophilic

description: Lacicoccus salitudinis YIM-C678 is a mesophilic bacterium that was isolated from saline soil.

NCBI tax id

• NCBI tax id: 465561
• Matching level: species

strain history

• @ref: 7138
• history: <- Xiaolong Cui; YIM-C678

doi: 10.13145/bacdive14436.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Bacilli
• order: Caryophanales
• family: Staphylococcaceae
• genus: Lacicoccus
• species: Lacicoccus salitudinis
• full scientific name: Lacicoccus salitudinis (Chen et al. 2008) Bello et al. 2023

• synonyms

  • @ref: 20215
  • synonym: Salinicoccus salitudinis

@ref: 7138

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Salinicoccus

species: Salinicoccus salitudinis

full scientific name: Salinicoccus salitudinis Chen et al. 2008

strain designation: YIM-C678

type strain: yes

Culture and growth conditions

culture medium

• @ref: 7138
• name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514
• composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 100.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 7138
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

murein

• @ref: 7138
• murein short key: A11.02
• type: A3alpha L-Lys-Gly_5-6

Isolation, sampling and environmental information

isolation

• @ref: 7138
• sample type: saline soil
• geographic location: Qaidam basin
• country: China
• origin.country: CHN
• continent: Asia

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_73313.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_15482;97_30534;98_48618;99_73313&stattab=map
• Last taxonomy: Salinicoccus salitudinis subclade
• 16S sequence: EF590121
• Sequence Identity:
• Total samples: 2528
• soil counts: 447
• aquatic counts: 175
• animal counts: 1812
• plant counts: 94

Sequence information

16S sequences

• @ref: 7138
• description: Salinicoccus salitudinis strain YIM C678 16S ribosomal RNA gene, partial sequence
• accession: EF590121
• length: 1491
• database: ena
• NCBI tax ID: 465561

GC content

• @ref: 7138
• GC-content: 46.5

External links

@ref: 7138

culture collection no.: DSM 17846, CGMCC 1.6299

literature

• topic: Phylogeny
• Pubmed-ID: 18060347
• title: Salinicoccus salitudinis sp. nov., a new moderately halophilic bacterium isolated from a saline soil sample.
• authors: Chen YG, Cui XL, Li WJ, Xu LH, Wen ML, Peng Q, Jiang CL
• journal: Extremophiles
• DOI: 10.1007/s00792-007-0116-8
• year: 2007
• mesh: China, DNA, Bacterial/*genetics, DNA, Ribosomal/*genetics, Hydrogen-Ion Concentration, Peptidoglycan/genetics/metabolism, *Phylogeny, RNA, Ribosomal, 16S/*genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride/pharmacology, *Soil Microbiology, Staphylococcaceae/isolation & purification/*physiology, Vitamin K 2/analogs & derivatives/metabolism
• topic2: Metabolism

Reference