Strain identifier

BacDive ID: 144261

Type strain: No

Species: Ornithobacterium rhinotracheale

NCBI tax ID(s): 28251 (species)

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General

@ref: 47902

BacDive-ID: 144261

keywords: Bacteria

description: Ornithobacterium rhinotracheale CCUG 24022 is a bacterium that was isolated from Turkey's trachea.

NCBI tax id

  • NCBI tax id: 28251
  • Matching level: species

doi: 10.13145/bacdive144261.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Ornithobacterium
  • species: Ornithobacterium rhinotracheale
  • full scientific name: Ornithobacterium rhinotracheale Vandamme et al. 1994

@ref: 47902

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Ornithobacterium

species: Ornithobacterium rhinotracheale

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47902C16:05.216
    47902C18:04.618
    47902C15:0 ISO5114.621
    47902C15:0 ISO 3OH616.135
    47902C17:0 iso 3OH19.418.161
    47902C18:1 ω9c2.217.769
    47902C18:2 ω6,9c/C18:0 ANTE6.817.724
    47902unknown 13.7662.713.766
    47902unknown 16.5802.116.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47902-+++-+++++++++-+-+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
47902----+--+------------+

Isolation, sampling and environmental information

isolation

  • @ref: 47902
  • sample type: Turkey's trachea(isolated in large quantities)
  • sampling date: 1988
  • geographic location: Plumeliau
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body-Site#Oral cavity and airways#Trachea

External links

@ref: 47902

culture collection no.: CCUG 24022, MCCM 01779, LMG 9088

straininfo link

  • @ref: 99484
  • straininfo: 7796

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47902Curators of the CCUGhttps://www.ccug.se/strain?id=24022Culture Collection University of Gothenburg (CCUG) (CCUG 24022)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
99484Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7796.1