Strain identifier
BacDive ID: 14402
Type strain: 
Species: Sporolactobacillus kofuensis
Strain Designation: M-18
Strain history: F. Yanagida <-- O. Nakayama M-18.
NCBI tax ID(s): 269672 (species)
version 8.1 (current version)
General
@ref: 4451
BacDive-ID: 14402
DSM-Number: 11701
keywords: 16S sequence, Bacteria, microaerophile, mesophilic
description: Sporolactobacillus kofuensis M-18 is a microaerophile, mesophilic bacterium that was isolated from rhizosphere.
NCBI tax id
- NCBI tax id: 269672
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4451 | <- F. Yanagida; M-18 |
| 67770 | F. Yanagida <-- O. Nakayama M-18. |
doi: 10.13145/bacdive14402.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Sporolactobacillaceae
- genus: Sporolactobacillus
- species: Sporolactobacillus kofuensis
- full scientific name: Sporolactobacillus kofuensis Yanagida et al. 1997
@ref: 4451
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Sporolactobacillaceae
genus: Sporolactobacillus
species: Sporolactobacillus kofuensis
full scientific name: Sporolactobacillus kofuensis Yanagida et al. 1997
strain designation: M-18
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4451 | GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) | yes | https://mediadive.dsmz.de/medium/852 | Name: GYP GLUCOSE-YEAST-PEPTONE MEDIUM (DSMZ Medium 852) Composition: Glucose 20.0 g/l Yeast extract 10.0 g/l Peptone 10.0 g/l Na-acetate 10.0 g/l Agar 10.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x 4 H2O 0.01 g/l FeSO4 x 7 H2O 0.01 g/l NaCl 0.01 g/l Distilled water |
| 4451 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4451 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 4451
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 4451
- sample type: rhizosphere
isolation source categories
- Cat1: #Host Body-Site
- Cat2: #Plant
- Cat3: #Rhizosphere
taxonmaps
- @ref: 69479
- File name: preview.99_34211.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_3495;97_4284;98_5485;99_34211&stattab=map
- Last taxonomy: Sporolactobacillus
- 16S sequence: D16287
- Sequence Identity:
- Total samples: 108
- soil counts: 31
- aquatic counts: 8
- animal counts: 56
- plant counts: 13
Safety information
risk assessment
- @ref: 4451
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Sporolactobacillus kofuensis gene for 16S rRNA, type strain DSM 11701T | AJ634661 | 1524 | ena | 269672 |
| 67770 | Sporolactobacillus laevis gene for 16S rRNA, strain: M18 | D16287 | 1484 | ena | 269672 |
GC content
- @ref: 67770
- GC-content: 43
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 4451
culture collection no.: DSM 11701, JCM 3418, IAM 14263
straininfo link
- @ref: 83546
- straininfo: 49158
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4451 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11701) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11701 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83546 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49158.1 | StrainInfo: A central database for resolving microbial strain identifiers |