Strain identifier

BacDive ID: 143973

Type strain: No

Species: Chryseobacterium gleum

Strain history: B. Holmes 3531.

NCBI tax ID(s): 250 (species)

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General

@ref: 47574

BacDive-ID: 143973

keywords: 16S sequence, Bacteria, mesophilic

description: Chryseobacterium gleum CCUG 22176 is a mesophilic bacterium that was isolated from Human sputum.

NCBI tax id

  • NCBI tax id: 250
  • Matching level: species

strain history

  • @ref: 67770
  • history: B. Holmes 3531.

doi: 10.13145/bacdive143973.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium gleum
  • full scientific name: Chryseobacterium gleum (Holmes et al. 1984) Vandamme et al. 1994

  • synonyms

    • @ref: 20215
    • synonym: Flavobacterium gleum

@ref: 47574

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium gleum

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47574C16:01.916
    47574C13:0 iso0.512.612
    47574C15:0 ISO35.214.621
    47574C15:0 ISO 3OH3.216.135
    47574C16:0 3OH1.117.52
    47574C16:1 ω7c/C15:0 ISO 2OH16.715.85
    47574C17:0 iso1.216.629
    47574C17:0 iso 3OH15.318.161
    47574C17:1 ω9c ISO14.516.416
    47574C18:2 ω6,9c/C18:0 ANTE2.817.724
    47574unknown 13.5666.413.566
    47574unknown 16.5801.316.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
47574-+---+++-----+------+

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
47574Human sputum1957South CarolinaUSAUSANorth America
67770Sputum

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum

Sequence information

16S sequences

  • @ref: 67770
  • description: Chryseobacterium gleum JCM 2409 gene for 16S ribosomal RNA, partial sequence
  • accession: LC383919
  • length: 1439
  • database: ena
  • NCBI tax ID: 250

GC content

  • @ref: 67770
  • GC-content: 36.6-38.6
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 47574

culture collection no.: CCUG 22176, NCTC 10795, JCM 2409, ATCC 29896

straininfo link

  • @ref: 99237
  • straininfo: 92475

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47574Curators of the CCUGhttps://www.ccug.se/strain?id=22176Culture Collection University of Gothenburg (CCUG) (CCUG 22176)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
99237Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID92475.1