Strain identifier

BacDive ID: 143971

Type strain: No

Species: Empedobacter brevis

NCBI tax ID(s): 247 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 47572

BacDive-ID: 143971

keywords: Bacteria

description: Empedobacter brevis CCUG 22174 is a bacterium that was isolated from Human clinical specimen.

NCBI tax id

  • NCBI tax id: 247
  • Matching level: species

doi: 10.13145/bacdive143971.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter brevis
  • full scientific name: Empedobacter brevis (Holmes and Owen 1982 ex Lustig 1890) Vandamme et al. 1994

  • synonyms

    @refsynonym
    20215Flavobacterium brevis
    20215Flavobacterium breve

@ref: 47572

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Empedobacter

species: Empedobacter brevis

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47572C14:01.614
    47572C15:0215
    47572C16:07.216
    47572C13:1 at 12-130.912.931
    47572C14:0 2OH0.415.205
    47572C15:0 ISO2214.621
    47572C15:0 ISO 3OH4.216.135
    47572C15:1 ω6c1.414.856
    47572C16:0 3OH3.617.52
    47572C16:0 iso0.715.626
    47572C16:0 iso 3OH0.617.145
    47572C16:1 ISO H0.415.461
    47572C16:1 ω5c9.515.908
    47572C16:1 ω7c19.115.819
    47572C17:0 iso0.816.629
    47572C17:0 iso 3OH11.218.161
    47572C17:1 ISO I/C16:0 DMA6.816.481
    47572C17:1 ω9c ISO216.416
    47572C18:2 ω6,9c/C18:0 ANTE0.317.724
    47572unknown 11.5410.411.541
    47572unknown 13.5664.513.566
    47572unknown 16.5800.416.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47572-+++-+++++++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
47572-+----+-------------+

Isolation, sampling and environmental information

isolation

  • @ref: 47572
  • sample type: Human clinical specimen
  • sampling date: 1988-02-01
  • geographic location: Kosakai
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Infection#Patient
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen

External links

@ref: 47572

culture collection no.: CCUG 22174

straininfo link

  • @ref: 99236
  • straininfo: 6870

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47572Curators of the CCUGhttps://www.ccug.se/strain?id=22174Culture Collection University of Gothenburg (CCUG) (CCUG 22174)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
99236Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID6870.1