Strain identifier

BacDive ID: 14384

Type strain: Yes

Species: Sporichthya brevicatena

Strain Designation: YU720-21

Strain history: IFO 16195 <-- T. Tamura <-- M. Hayakawa YU720-21.

NCBI tax ID(s): 171442 (species)

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General

@ref: 12041

BacDive-ID: 14384

DSM-Number: 44723

keywords: 16S sequence, Bacteria, mesophilic

description: Sporichthya brevicatena YU720-21 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 171442
  • Matching level: species

strain history

@refhistory
12041<- NBRC <- IFO <- M. Hayakawa, Yamanashi Univ.; YU720-21
67770IFO 16195 <-- T. Tamura <-- M. Hayakawa YU720-21.

doi: 10.13145/bacdive14384.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Sporichthyales
  • family: Sporichthyaceae
  • genus: Sporichthya
  • species: Sporichthya brevicatena
  • full scientific name: Sporichthya brevicatena Tamura et al. 1999

@ref: 12041

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Sporichthyaceae

genus: Sporichthya

species: Sporichthya brevicatena

full scientific name: Sporichthya brevicatena Tamura et al. 1999

strain designation: YU720-21

type strain: yes

Morphology

multimedia

@refmultimedia contentintellectual property rightscaption
12041https://www.dsmz.de/microorganisms/photos/DSM_44723-1.jpg© Leibniz-Institut DSMZ
12041https://www.dsmz.de/microorganisms/photos/DSM_44723.jpg© Leibniz-Institut DSMZMedium 214 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12041YEAST-STARCH-AGAR(B) (DSMZ Medium 656)yeshttps://mediadive.dsmz.de/medium/656Name: YEAST-STARCH-AGAR(B) (DSMZ Medium 656) Composition: Starch 15.0 g/l Agar 15.0 g/l Yeast extract 4.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Distilled water
12041GYM+S MEDIUM (DSMZ Medium 214)yeshttps://mediadive.dsmz.de/medium/214Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12041YEAST STARCH AGAR (A) (DSMZ Medium 1027)yeshttps://mediadive.dsmz.de/medium/1027Name: YEAST STARCH AGAR (A) (DSMZ Medium 1027) Composition: Agar 15.0 g/l Starch 10.0 g/l Yeast extract 2.0 g/l Distilled water
12041STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
12041GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
12041positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-8(H6), MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
12041soil
67770SoilYamanashi Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_49983.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_3568;97_4383;98_5612;99_49983&stattab=map
  • Last taxonomy: Sporichthya brevicatena
  • 16S sequence: AB006164
  • Sequence Identity:
  • Total samples: 96
  • soil counts: 28
  • aquatic counts: 24
  • animal counts: 33
  • plant counts: 11

Safety information

risk assessment

  • @ref: 12041
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sporichthya brevicatena strain IFO 16195 16S ribosomal RNA gene, partial sequenceJQ899212655ena171442
12041Sporichthya brevicatena gene for 16S ribosomal RNA, partial sequenceAB0061641466ena171442

GC content

@refGC-contentmethod
1204171
6777071high performance liquid chromatography (HPLC)

External links

@ref: 12041

culture collection no.: DSM 44723, IFO 16195, JCM 10671, KCTC 19878, NBRC 16195

straininfo link

  • @ref: 83527
  • straininfo: 62943

literature

  • topic: Phylogeny
  • Pubmed-ID: 10555360
  • title: Sporichthya brevicatena sp. nov.
  • authors: Tamura T, Hayakawa M, Hatano K
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-4-1779
  • year: 1999
  • mesh: Actinomycetales/chemistry/*classification/cytology/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12041Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44723)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44723
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83527Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID62943.1StrainInfo: A central database for resolving microbial strain identifiers